1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tttcctggtttcattcgttcagctccatactactactttttaatgattcagtcatgcatgctattaagctgactactttctttatgcaaattggacacagGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAGAGTCAGAACAGATAGAGGGTATCGAAGTGTTAGCAACAATACTTGACAA
species | Oryza sativa |
transcript | LOC_Os07g23990.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: TCCATCCGACATTTTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAG GTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAGEST: gi|29625530|gb|CB630541.1|CB630541
genomic: TCCATCCGACATTCTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAGgtatggctta ... ttggacacagGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAG
EST: TCCATCCGACATTCTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAG GTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAGEST: gi|29675753|gb|CB672028.1|CB672028
genomic: TCCATCCGACATTCTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAGgtatggctta ... ttggacacagGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAG
EST: TCCATCCGACATTTTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAG GTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAGEST: gi|29641707|gb|CB646714.1|CB646714
genomic: TCCATCCGACATTCTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAGgtatggctta ... ttggacacagGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAG
EST: TCCATCCGACATTCTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAG GTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAGEST: gi|9866032|gb|AU101782.1|AU101782
genomic: TCCATCCGACATTCTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAGgtatggctta ... ttggacacagGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAG
EST: TCCATCCGACATTCTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAG GTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAG
genomic: TCCATCCGACATTCTGAAAGGTCAAATGCATATGTTTTCAGTTCAATAAGgtatggctta ... ttggacacagGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAG
attcagtcatgcatgctattaagctgactactttctttatgcaaattggacacagGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAGAGTCAGAACAGATAGAGGGTATCGAAGTGTTAGCAACAATACTTGACAA
agctgac putative branch site (score: 29)
tttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctggtttcattcgttcagctccatactactactttttaatgattcagtcatgcatgctattaagctgactactttctttatgcaaattggacacagGTGTTGGCAATTCTGTGTAGAATTCAGAAGATTTGCAGAGAGTTTTGGGAGAGTCAGAACAGATAGAGGGTATCGAAGTGTTAGCAACAATACTTGACAA
-ttcctgg
- - - - tttcatt
- - - - - - - - - -cagctcc
- - - - - - - - - - - - - - - - - - - - - -tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaaa