1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' |
gtaagcatctcgacatgctatgattagtgaatcttaatattttgtattaccactgatattttttctttgctgttttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTTGGTGTTGATGACCCAACTAAAATTCGGCTTACATCGCATAACTGTTAT
species | Oryza sativa |
transcript | LOC_Os07g06950.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|66922652|gb|CX109500.1|CX109500
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|58659867|gb|CK048547.1|CK048547
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCGGAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|27577375|gb|CB000070.1|CB000070
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTGACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|58656552|gb|CK045232.1|CK045232
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|58674203|gb|CK062889.1|CK062889
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|58654004|gb|CK042684.1|CK042684
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|88410434|gb|CI686365.1|CI686365
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: GATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|58658981|gb|CK047661.1|CK047661
genomic: GATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|58668010|gb|CK056696.1|CK056696
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTEST: gi|163920232|gb|EG710577.1|EG710577
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
EST: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT GTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
genomic: CATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGATgtaagcatct ... ttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACT
aatcttaatattttgtattaccactgatattttttctttgctgttttctgtatagGTCGAAGGCTTTCACGTATGATGAAGTAGTGGAAAAGGTGGCTCAAAAACTTGGTGTTGATGACCCAACTAAAATTCGGCTTACATCGCATAACTGTTAT
cactgat putative branch site (score: 42)
tattttttctttgctg CT-rich tract
taatattttgtatta TA-rich tract