1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtattgcgtgtggagtgtgcattttgctatccatgttcaacttattatgaaatttttcaactttcctttctagtgttgatgaccgtgtcactcaaccattgttccgtttatcctttctccttgattaaatgtctgtagtgctatattcatcatcatgttctgaaaataataacataggattcctcatagGTTTTGGAAGAGAACAAAGTGGAGGAGAGCACAGATGAAGCTGTCGAAGTTGATGCTGATGAGCCTGAAGAGACCGTTCTTGTAAATGGGAAAGAGGGTG
species | Oryza sativa |
transcript | LOC_Os06g05180.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGAAACAGAAGATGCACTAGATGAAAATGGAGAGCCCGATGAAGAG GTTTTGGAAGAGAACAAAGTGGAGGAGAGCACAGATGAAGCTGTCGAAGTTEST: gi|33679448|gb|CF307687.1|CF307687
genomic: ATGAGGAAACAGAAGATGCACTAGATGAAAATGGAGAGCCCGATGAAGAGgtattgcgtg ... ttcctcatagGTTTTGGAAGAGAACAAAGTGGAGGAGAGCACAGATGAAGCTGTCGAAGTT
EST: ATGAGGAAACAGAAGATGCACTAGATGAAAATGGAGAGCCCGATGAAGAG GGTTTTGGAAGAGAACAAAGTGGAGGAGAGCACAGATGAAGEST: gi|11370679|gb|AU164984.1|AU164984
genomic: ATGAGGAAACAGAAGATGCACTAGATGAAAATGGAGAGCCCGATGAAGAGgtattgcgtg ... ttcctcatagG-TTTTGGAAGAGAACAAAGTGGAGGAGAGCACAGATGAAG
EST: ATGAGGAAACAGAAGATGCACTAGATGAAAATGGAGAGCCCGATGAAGAG GTTTTGGAAGAGANCAAAGTGGAGGAGAGCACAGATGAAGCTGTCGAAGTT
genomic: ATGAGGAAACAGAAGATGCACTAGATGAAAATGGAGAGCCCGATGAAGAGgtattgcgtg ... ttcctcatagGTTTTGGAAGAGAACAAAGTGGAGGAGAGCACAGATGAAGCTGTCGAAGTT
gtagtgctatattcatcatcatgttctgaaaataataacataggattcctcatagGTTTTGGAAGAGAACAAAGTGGAGGAGAGCACAGATGAAGCTGTCGAAGTTGATGCTGATGAGCCTGAAGAGACCGTTCTTGTAAATGGGAAAGAGGGTG
taataac putative branch site (score: 1)
ttcctcat putative PPT
tgaaaataataacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcgtgtggagtgtgcattttgctatccatgttcaacttattatgaaatttttcaactttcctttctagtgttgatgaccgtgtcactcaaccattgttccgtttatcctttctccttgattaaatgtctgtagtgctatattcatcatcatgttctgaaaataataacataggattcctcatagGTTTTGGAAGAGAACAAAGTGGAGGAGAGCACAGATGAAGCTGTCGAAGTTGATGCTGATGAGCCTGAAGAGACCGTTCTTGTAAATGGGAAAGAGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG