1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtgagtagtcatgaaaagtaacagataggagaatgtgatctgtctcttactgaccaaattgctattgcttcttctccttgaacacctcagGTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCAAGCATGGAATCCATTGAGCAGTTGCGAACCCCGGATTACGATGAGCTTC
species | Oryza sativa |
transcript | LOC_Os05g02670.2 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: TAGAGGAAGAATATGTG GTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCAEST: gi|86538662|gb|CI178868.1|CI178868
genomic: TAGAGGAAGAATATCTGgtgagtagtc ... aacacctcagGTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCA
EST: TTGTTGAGATTACTGAAAATGCTGGGAAATGCCTAGAGGAAGAATATCTG GTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCAEST: gi|8527333|gb|AU092148.1|AU092148
genomic: TTGTTGAGATTACTGAAAATGCTGGGAAATGCCTAGAGGAAGAATATCTGgtgagtagtc ... aacacctcagGTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCA
EST: TTGTTGAGATTACTGAAAATNCTGGGAAATGCCTAGAGGAAGAATATCTG GTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCAEST: gi|88246876|gb|CI244653.1|CI244653
genomic: TTGTTGAGATTACTGAAAATGCTGGGAAATGCCTAGAGGAAGAATATCTGgtgagtagtc ... aacacctcagGTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCA
EST: CTGGGAAATGCCTAGAGGAAGAATATCTG GTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCCAATCGACCTGCCAEST: gi|88967153|gb|CI392115.1|CI392115
genomic: CTGGGAAATGCCTAGAGGAAGAATATCTGgtgagtagtc ... aacacctcagGTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCA
EST: TTGTTGAGATTACTGAAAATGCTGGGAAATGCCTAGAGGAAGAATATCTG GTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCAEST: gi|88674471|gb|CI728584.1|CI728584
genomic: TTGTTGAGATTACTGAAAATGCTGGGAAATGCCTAGAGGAAGAATATCTGgtgagtagtc ... aacacctcagGTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCA
EST: TTGTTGAGATTACTGAAAATGCTGGGAAATGCCTAGAGGAAGAATATCTG GTGGATGAACCATCATGTTCGAC
genomic: TTGTTGAGATTACTGAAAATGCTGGGAAATGCCTAGAGGAAGAATATCTGgtgagtagtc ... aacacctcagGTGGATGAACCATCATGTTCGAC
tgatctgtctcttactgaccaaattgctattgcttcttctccttgaacacctcagGTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCAAGCATGGAATCCATTGAGCAGTTGCGAACCCCGGATTACGATGAGCTTC
tactgac putative branch site (score: 1)
cttcttctccttga putative PPT
aaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagtcatgaaaagtaacagataggagaatgtgatctgtctcttactgaccaaattgctattgcttcttctccttgaacacctcagGTGGATGAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCAAGCATGGAATCCATTGAGCAGTTGCGAACCCCGGATTACGATGAGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT