Sequence
atgc intronic sequence ATGC exonic sequencegtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
Basic information
species | Oryza sativa |
transcript | LOC_Os03g22420.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G482077_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------gtaagtaaattgtaattgatca--atcacaac----gcct-ttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || | || | | | | || | ||| || | | |||| | ||||| | | || | | | | |||| | |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||| |||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttattctgccct-tgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGATCTGAGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G417650_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------gtaagtaaattgtaattgatca--atcacaac----gcct-ttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || | || | | | | || | ||| || | | |||| | ||||| | | || | | | |||| | |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagcattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttatcctgccct-tgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G370521_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------gtaagtaaattgtaattgatca--atcaca-----acgcctttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || | || | | || | ||| || | | |||| | ||||| | | || | | | |||| | |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||
gtacgtactggtctaattaaaggtgcatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatatgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttatcctgccct-tgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G438355_T01 (Zea mays), 3'ss of exon 2
----------------------------------------gtaagtaaattgtaattgatca--atcaca-----acgcctttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | ||||||| | | || | || | | || | |||||| | | |||| | |||||| | | || | |||| | | | ||||||||||||||| |||| |||| || |||||| ||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||| |||| ||
gtaagttatagtagtgttgtgattcatgtacattttctacttatttcaattgtactaggacaccaccatatttgtagtttgttgtcaattccatattgatgcatactttcttgctcattta--tcatgccctagtttttagGTTGATGGCATGCTGGGAAGGCAGGAGAACCCTAGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTCTATGGTGAACTGGGATGGTCTCAGAAGAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G409190_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------gtaagtaaattgtaattgatca--atcacaac----gcct-ttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || | || | | | | || | ||| | | | |||| | ||||| | | || | | | |||| | |||||||||||||||||||| ||||| || ||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcctatattgatgcatactttcctgctcatttatcctgccct-tgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCGGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G042074_T02 (Zea mays), 3'ss of exon 18
----------------------------------------gtaagtaaattgtaattgatcaatcacaacgcct-----ttctgaattccctgt-gatgtttgctttctagtttatct-tcttcatcttgt----gttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || ||||| || || | ||| || | | ||| | |||| | | || | || | |||||| || | ||||||||||||||| |||| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
gtaagttatagtagtgttgtgatccatgaacaatttctatttatttgatctgtaccaggaca-ccacaatatctgtagtttgtcaatcccgtattaatgcatacttttctgctcatttatcctgctcttgtttttattttttagGTTGATGGCATGCTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGTAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G168228_T01 (Zea mays), 3'ss of exon 2
----------gtaagtaaattgtaattgatcaat-cacaacgcctttctg--aattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| | | | | |||| | |||| | | | || || | || | | || |||||| | ||||| || |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||
acttactccacctctgggactttgaacgtccaatgtggagagcctggcagccgaggaggtgggaggctttcctgctcatttatcctgc---ccttgtttt---tagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA02G17410.1 (Glycine max), 3'ss of exon 18
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgt-------gttgta-tagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| | || | ||| | ||| | | | | | | ||| || | | |||||| | |||| |||| |||||||| | ||| | || || |||||||||||| | || ||||| || ||||| ||||||||||||||||||||||| || ||||||||||| | ||||
-tgaagaactaaacatttaaatctcatattttttatggtagctactatggattttcttagtttcaattatctgtgttgatttgttgtggcaattgtggcagGTTGATAGTATGCTTGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA10G02410.1 (Glycine max), 3'ss of exon 19
gtaagtaaattgtaattgatcaatcacaacgcctttct---gaattccctgtg---atgtttgctttctagtttatcttcttcatct--tgtgttgt-----atagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | | ||||| | | || | || || |||| | | | | | || || | |||||| |||||||| | ||||| || || |||||||| ||||| || ||||| || |||||||||||||| ||||| || ||||| || ||||||||| | ||||||
------ggcttaaacatattcaaatctagtgtttttctttggtagcttctacggatattcttagtttcaattatctgtgtttgatttgctgtgttactgatggcagGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 23
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
||||| ||||| | | || | | | | | ||||| | || | | | | || | |||||||||||||| |||||||||| ||| | ||||| ||||| || ||||| || ||||| || ||||||||||| || |||||||| |||||||| || | ||||
gtaagccttttgta--taaatgttctta--gtttgtatcaattcaaca-gctgaaaaataaatcagtgaaaactagtatggcttcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA04G37050.1 (Glycine max), 3'ss of exon 6
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
||||| ||| | | | || | || | | | | || || | | ||| | || | |||||||||||||| |||||||||| ||| | ||||| ||||| || ||||| || ||||| || ||||||||||| || ||||||||||||||||| || | ||||
gtaagccttttgca--caaatgtttttaatttgtatc---aattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGCACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA05G03270.1 (Glycine max), 3'ss of exon 19
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|||| | | | || | || | ||| || || | || | | | || | |||| | ||||||| ||||||||||| | | |||||||| ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||||| || | || |
-----------gtaagccttttaacttaagggtattgt------tttgtattgatt-cattggatgtaactttactagctttgttt----cagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA10G02400.1 (Glycine max), 3'ss of exon 22
-----------gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttcta-gtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| ||||| | | | || | | || | |||||| || | | | | ||| ||| || | | | ||| | | ||||||| | ||| | || || |||||||||||| | || ||||| || ||||| ||||||||||||||||||||||| || ||||||||||| | ||||
tgaagacctaaacatttaaatctccaattttttatgata--gctactatgaattttct-tagtttcaattatctgtgttgatttgttgtggcaattgtggca--gGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA17G13850.1 (Glycine max), 3'ss of exon 21
gtaagtaaattgtaattgatcaatcacaacgccttt--ctgaattccctgtgatgt-ttgctttctagtttatcttcttcatcttgtgttgtat-agGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | ||| | | |||| ||| ||| || | | ||| || || | |||| | ||||||| ||||||||||| || | |||||||| ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||||| || | || |
-------------------------gtaagccttttaaccaagggtattgtgttgtattgattcattgaatataacttt--actagctttgtttcagGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGCACGA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA02G17400.1 (Glycine max), 3'ss of exon 19
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattcc-ctgtgatgtttgctttcta--gtttatcttc--ttcatcttgtgttgt-----atagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | | | ||| | | || | ||| | | || |||||||| | | | | || || | ||||| | |||||||| | ||||| || || |||||||| ||||| |||||||| || |||||||||||||| ||||| || ||||| || ||||||||| | |||||||
--aaatgagcattcag-aatctagtgtttttctttggtagcttctacagatattcttgctttcaattatctgtgtttgatttgttttgtgacattggtggcagGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAACATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGAGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT1G02890.2 (Arabidopsis thaliana), 3'ss of exon 21
-gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatg--tttgctttctagtttatcttcttcatcttgt----gttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| ||| ||| | | || ||| | | | || | | ||| || | |||||| | | | || | ||||||||| ||||| |||| || ||||| || || |||||||||||||| |||||||| ||||| || || || ||| | |||||||| || || | ||||
atgaggtatgttgctagacgttaagaacagctctcatacctgtttattacagttcctttttctttctgaatatcttttgaacgggatcaaaattatgtagGTTGATAGCATGCTGGGAAGACGTGAGAATCCAGGAGAACATGAAGCTATGCGTAAGATGAAGAACGAATTCATGATAAACTGGGACGGCTTACGCACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT1G02890.1 (Arabidopsis thaliana), 3'ss of exon 22
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatg--tttgctttctagtttatcttcttcatcttgt----gttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
||| ||| | | || ||| | | | || | | ||| || | |||||| | | | || | ||||||||| ||||| |||| || ||||| || || |||||||||||||| |||||||| ||||| || || || ||| | |||||||| || || | ||||
----gtatgttgctagacgttaagaacagctctcatacctgtttattacagttcctttttctttctgaatatcttttgaacgggatcaaaattatgtagGTTGATAGCATGCTGGGAAGACGTGAGAATCCAGGAGAACATGAAGCTATGCGTAAGATGAAGAACGAATTCATGATAAACTGGGACGGCTTACGCACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
gtaagtaaattgtaattgatcaatcacaacgcct-ttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtg--------------ttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
||| || ||| | | | || | || |||| ||| ||| | | || | | || |||| |||| || || | |||||||| ||||||||||||| |||||||| || || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||| |||||||||
gtatgt---ttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 22
---------------------------------------------------------------------------gtaagtaaattgtaattgatcaatc-----acaacgcctttctga-----attccctgtgatgtttgctttctagtttatcttct-tcatcttg----tgttgtat-agGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| ||| | |||| || |||||| | |||| |||||| | | || | | ||| | | || || | | | | ||| | |||| | ||||||| ||||||| || || |||||||| || |||||||||||||| ||| | |||||||| |||||||| ||||||||||||||||| ||| | ||||
gtaagttgaataaatctttaaattcatccacaacttttgctataatgttcctcactctttttatgggtccatggatttagtga-cggtaactgttcaatccttttaattcgccattctgatctttagtttctttcttcttttcctgttaaaaaatttattgttaacttagatttattgtttcagGTTGACAGCATGTTAGGGAGACGTGAAAATCCAGGAGAACATGAAGCTATGAGGAAAATGAAGAATGAGTTCATGGTGAACTGGGATGGCCTACGTACAA
upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtat---agGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| | ||| |||| || | | | ||||||||| || | | | || || | |||| | |||||||| ||||| |||| || | || || || || |||||||| || |||||||| |||||||| || |||||||| ||||||||||| | | ||||
--------------gtgagcttcatataac-tctttttg---tttatatattgtttgcttcctc-tctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58688470|gb|CK077157.1|CK077157EST: TATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAG GTTGATGGCATGTTGGGTAGGCGTGAAAACCC
genomic: TATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGgtaagtaaat ... tgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCC
EST:
gi|58662327|gb|CK051007.1|CK051007EST: TATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAG GTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATG
genomic: TATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGgtaagtaaat ... tgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
tcttcttcatcttgt CT-rich tract
tagtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC