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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA

Basic information

species Oryza sativa
transcript LOC_Os03g22420.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G482077_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------gtaagtaaattgtaattgatca--atcacaac----gcct-ttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || | || | | | | || | ||| || | | |||| | ||||| | | || | | | | |||| | |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||| |||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttattctgccct-tgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGATCTGAGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G417650_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------gtaagtaaattgtaattgatca--atcacaac----gcct-ttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || | || | | | | || | ||| || | | |||| | ||||| | | || | | | |||| | |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagcattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttatcctgccct-tgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G370521_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------gtaagtaaattgtaattgatca--atcaca-----acgcctttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || | || | | || | ||| || | | |||| | ||||| | | || | | | |||| | |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||
gtacgtactggtctaattaaaggtgcatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatatgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttatcctgccct-tgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G438355_T01 (Zea mays), 3'ss of exon 2
----------------------------------------gtaagtaaattgtaattgatca--atcaca-----acgcctttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | ||||||| | | || | || | | || | |||||| | | |||| | |||||| | | || | |||| | | | ||||||||||||||| |||| |||| || |||||| ||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||| |||| ||
gtaagttatagtagtgttgtgattcatgtacattttctacttatttcaattgtactaggacaccaccatatttgtagtttgttgtcaattccatattgatgcatactttcttgctcattta--tcatgccctagtttttagGTTGATGGCATGCTGGGAAGGCAGGAGAACCCTAGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTCTATGGTGAACTGGGATGGTCTCAGAAGAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G409190_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------gtaagtaaattgtaattgatca--atcacaac----gcct-ttctgaattccctgt-gatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || | || | | | | || | ||| | | | |||| | ||||| | | || | | | |||| | |||||||||||||||||||| ||||| || ||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcctatattgatgcatactttcctgctcatttatcctgccct-tgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCGGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G042074_T02 (Zea mays), 3'ss of exon 18
----------------------------------------gtaagtaaattgtaattgatcaatcacaacgcct-----ttctgaattccctgt-gatgtttgctttctagtttatct-tcttcatcttgt----gttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | || ||||| || || | ||| || | | ||| | |||| | | || | || | |||||| || | ||||||||||||||| |||| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
gtaagttatagtagtgttgtgatccatgaacaatttctatttatttgatctgtaccaggaca-ccacaatatctgtagtttgtcaatcccgtattaatgcatacttttctgctcatttatcctgctcttgtttttattttttagGTTGATGGCATGCTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGTAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G168228_T01 (Zea mays), 3'ss of exon 2
----------gtaagtaaattgtaattgatcaat-cacaacgcctttctg--aattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| | | | | |||| | |||| | | | || || | || | | || |||||| | ||||| || |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||
acttactccacctctgggactttgaacgtccaatgtggagagcctggcagccgaggaggtgggaggctttcctgctcatttatcctgc---ccttgtttt---tagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA02G17410.1 (Glycine max), 3'ss of exon 18
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgt-------gttgta-tagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| | || | ||| | ||| | | | | | | ||| || | | |||||| | |||| |||| |||||||| | ||| | || || |||||||||||| | || ||||| || ||||| ||||||||||||||||||||||| || ||||||||||| | ||||
-tgaagaactaaacatttaaatctcatattttttatggtagctactatggattttcttagtttcaattatctgtgttgatttgttgtggcaattgtggcagGTTGATAGTATGCTTGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA10G02410.1 (Glycine max), 3'ss of exon 19
gtaagtaaattgtaattgatcaatcacaacgcctttct---gaattccctgtg---atgtttgctttctagtttatcttcttcatct--tgtgttgt-----atagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | |||| | | ||||| | | || | || || |||| | | | | | || || | |||||| |||||||| | ||||| || || |||||||| ||||| || ||||| || |||||||||||||| ||||| || ||||| || ||||||||| | ||||||
------ggcttaaacatattcaaatctagtgtttttctttggtagcttctacggatattcttagtttcaattatctgtgtttgatttgctgtgttactgatggcagGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 23
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
||||| ||||| | | || | | | | | ||||| | || | | | | || | |||||||||||||| |||||||||| ||| | ||||| ||||| || ||||| || ||||| || ||||||||||| || |||||||| |||||||| || | ||||
gtaagccttttgta--taaatgttctta--gtttgtatcaattcaaca-gctgaaaaataaatcagtgaaaactagtatggcttcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA04G37050.1 (Glycine max), 3'ss of exon 6
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
||||| ||| | | | || | || | | | | || || | | ||| | || | |||||||||||||| |||||||||| ||| | ||||| ||||| || ||||| || ||||| || ||||||||||| || ||||||||||||||||| || | ||||
gtaagccttttgca--caaatgtttttaatttgtatc---aattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGCACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA05G03270.1 (Glycine max), 3'ss of exon 19
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|||| | | | || | || | ||| || || | || | | | || | |||| | ||||||| ||||||||||| | | |||||||| ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||||| || | || |
-----------gtaagccttttaacttaagggtattgt------tttgtattgatt-cattggatgtaactttactagctttgttt----cagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA10G02400.1 (Glycine max), 3'ss of exon 22
-----------gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttcta-gtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| ||||| | | | || | | || | |||||| || | | | | ||| ||| || | | | ||| | | ||||||| | ||| | || || |||||||||||| | || ||||| || ||||| ||||||||||||||||||||||| || ||||||||||| | ||||
tgaagacctaaacatttaaatctccaattttttatgata--gctactatgaattttct-tagtttcaattatctgtgttgatttgttgtggcaattgtggca--gGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA17G13850.1 (Glycine max), 3'ss of exon 21
gtaagtaaattgtaattgatcaatcacaacgccttt--ctgaattccctgtgatgt-ttgctttctagtttatcttcttcatcttgtgttgtat-agGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | ||| | | |||| ||| ||| || | | ||| || || | |||| | ||||||| ||||||||||| || | |||||||| ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||||| || | || |
-------------------------gtaagccttttaaccaagggtattgtgttgtattgattcattgaatataacttt--actagctttgtttcagGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGCACGA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA02G17400.1 (Glycine max), 3'ss of exon 19
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattcc-ctgtgatgtttgctttcta--gtttatcttc--ttcatcttgtgttgt-----atagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
|| | | | | ||| | | || | ||| | | || |||||||| | | | | || || | ||||| | |||||||| | ||||| || || |||||||| ||||| |||||||| || |||||||||||||| ||||| || ||||| || ||||||||| | |||||||
--aaatgagcattcag-aatctagtgtttttctttggtagcttctacagatattcttgctttcaattatctgtgtttgatttgttttgtgacattggtggcagGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAACATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGAGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT1G02890.2 (Arabidopsis thaliana), 3'ss of exon 21
-gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatg--tttgctttctagtttatcttcttcatcttgt----gttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| ||| ||| | | || ||| | | | || | | ||| || | |||||| | | | || | ||||||||| ||||| |||| || ||||| || || |||||||||||||| |||||||| ||||| || || || ||| | |||||||| || || | ||||
atgaggtatgttgctagacgttaagaacagctctcatacctgtttattacagttcctttttctttctgaatatcttttgaacgggatcaaaattatgtagGTTGATAGCATGCTGGGAAGACGTGAGAATCCAGGAGAACATGAAGCTATGCGTAAGATGAAGAACGAATTCATGATAAACTGGGACGGCTTACGCACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT1G02890.1 (Arabidopsis thaliana), 3'ss of exon 22
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatg--tttgctttctagtttatcttcttcatcttgt----gttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
||| ||| | | || ||| | | | || | | ||| || | |||||| | | | || | ||||||||| ||||| |||| || ||||| || || |||||||||||||| |||||||| ||||| || || || ||| | |||||||| || || | ||||
----gtatgttgctagacgttaagaacagctctcatacctgtttattacagttcctttttctttctgaatatcttttgaacgggatcaaaattatgtagGTTGATAGCATGCTGGGAAGACGTGAGAATCCAGGAGAACATGAAGCTATGCGTAAGATGAAGAACGAATTCATGATAAACTGGGACGGCTTACGCACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
gtaagtaaattgtaattgatcaatcacaacgcct-ttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtg--------------ttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
||| || ||| | | | || | || |||| ||| ||| | | || | | || |||| |||| || || | |||||||| ||||||||||||| |||||||| || || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||| |||||||||
gtatgt---ttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 22
---------------------------------------------------------------------------gtaagtaaattgtaattgatcaatc-----acaacgcctttctga-----attccctgtgatgtttgctttctagtttatcttct-tcatcttg----tgttgtat-agGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| ||| | |||| || |||||| | |||| |||||| | | || | | ||| | | || || | | | | ||| | |||| | ||||||| ||||||| || || |||||||| || |||||||||||||| ||| | |||||||| |||||||| ||||||||||||||||| ||| | ||||
gtaagttgaataaatctttaaattcatccacaacttttgctataatgttcctcactctttttatgggtccatggatttagtga-cggtaactgttcaatccttttaattcgccattctgatctttagtttctttcttcttttcctgttaaaaaatttattgttaacttagatttattgtttcagGTTGACAGCATGTTAGGGAGACGTGAAAATCCAGGAGAACATGAAGCTATGAGGAAAATGAAGAATGAGTTCATGGTGAACTGGGATGGCCTACGTACAA

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtat---agGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
| | ||| |||| || | | | ||||||||| || | | | || || | |||| | |||||||| ||||| |||| || | || || || || |||||||| || |||||||| |||||||| || |||||||| ||||||||||| | | ||||
--------------gtgagcttcatataac-tctttttg---tttatatattgtttgcttcctc-tctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688470|gb|CK077157.1|CK077157
EST:     TATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAG                         GTTGATGGCATGTTGGGTAGGCGTGAAAACCC
genomic: TATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGgtaagtaaat ... tgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCC
EST: gi|58662327|gb|CK051007.1|CK051007
EST:     TATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAG                         GTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATG
genomic: TATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGgtaagtaaat ... tgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA
                               tcttcttcatcttgt  CT-rich tract
 tagtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC