1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gtaagtagatttgagcttatgattggaaatttggagtatcatcttatttttgtactggcatttttatgataacatttgaatgcacaatgaatggttattaccccctttttttccctatttcttgcttgcagGCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTGAAATCGGTTCTTGATCAGAGCATACGTATTATACAGGCTATGATTGACA
species | Oryza sativa |
transcript | LOC_Os03g11470.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: ATCAGCAACACCTTGATGACCCACATGTTAAAGCAAACTTACTCTTTCAG GCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTGEST: gi|29636797|gb|CB641806.1|CB641806
genomic: ATCAGCAACACCTTGATGACCCACATGTTAAAGCAAACTTACTCTTTCAGgtaagtagat ... ttgcttgcagGCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTG
EST: ATCAGCAACACCTTGATGACCCACATGTTAAAGCAAACTTACTCTTTCAG GCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTGEST: gi|157650247|gb|EX449881.1|EX449881
genomic: ATCAGCAACACCTTGATGACCCACATGTTAAAGCAAACTTACTCTTTCAGgtaagtagat ... ttgcttgcagGCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTG
EST: ACTTACTCTTTCAG GCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTG
genomic: ACTTACTCTTTCAGgtaagtagat ... ttgcttgcagGCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTG
tgaatgcacaatgaatggttattaccccctttttttccctatttcttgcttgcagGCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTGAAATCGGTTCTTGATCAGAGCATACGTATTATACAGGCTATGATTGACA
ttattacccccttttt CT-rich tract
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagatttgagcttatgattggaaatttggagtatcatcttatttttgtactggcatttttatgataacatttgaatgcacaatgaatggttattaccccctttttttccctatttcttgcttgcagGCACACTTTTCCAGAGCAGAATTACCAATTAGTGACTATGTCACTGATTTGAAATCGGTTCTTGATCAGAGCATACGTATTATACAGGCTATGATTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA