1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...tgatcattatttcaataaaatcacattttttgctattcattatattttcttttctccttgctttaagttgtaatatagtaatatcaatctggtccaccagGCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTGATGTTGAAGCTGATGGTTCGACTGACGGTACTGTCCTTGTGAACGGAA
species | Oryza sativa |
transcript | LOC_Os02g11830.2 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: TACATCAAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|86430195|gb|CI082618.1|CI082618
genomic: TACATCAAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactct ... ggtccaccagGCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCAAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|27576683|gb|CA999377.1|CA999377
genomic: TACATCAAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactct ... ggtccaccagGCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCAAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|86479335|gb|CI121968.1|CI121968
genomic: TACATCAAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactct ... ggtccaccagGCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCAAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
genomic: TACATCAAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactct ... ggtccaccagGCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
tttcttttctccttgctttaagttgtaatatagtaatatcaatctggtccaccagGCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTGATGTTGAAGCTGATGGTTCGACTGACGGTACTGTCCTTGTGAACGGAA
tttaagttgtaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcattatttcaataaaatcacattttttgctattcattatattttcttttctccttgctttaagttgtaatatagtaatatcaatctggtccaccagGCTATCGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTGATGTTGAAGCTGATGGTTCGACTGACGGTACTGTCCTTGTGAACGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - caataaa
- - - - - - - - - - - - - -ttttgct