1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
gtaagctttttgctactattacctctcctgcttttaggacccgagtacagtatgttagtgattactttatccacatctctctaatatggtcaatgtcgcccaattatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGC
species | Oryza sativa |
transcript | LOC_Os01g39380.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTA ATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACEST: gi|33690825|gb|CF319064.1|CF319064
genomic: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAgtaagctttt ... attatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCAC
EST: AAGCTTAAGGGCTAGCTCTTTCAACCGAACTA ATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACEST: gi|87023608|gb|CI286359.1|CI286359
genomic: AAGCTTAAGGGCTAGCTCTTTCAACCGAACTAgtaagctttt ... attatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCAC
EST: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTA ATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACEST: gi|3763545|gb|AU030297.1|AU030297
genomic: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAgtaagctttt ... attatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCAC
EST: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTA ATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACEST: gi|58694147|gb|CK082834.1|CK082834
genomic: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAgtaagctttt ... attatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCAC
EST: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTA ATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACEST: gi|163918523|gb|EG713217.1|EG713217
genomic: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAgtaagctttt ... attatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCAC
EST: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTA ATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACEST: gi|163926766|gb|EG715054.1|EG715054
genomic: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAgtaagctttt ... attatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCAC
EST: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTA ATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCAC
genomic: CATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAgtaagctttt ... attatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCAC
gtgattactttatccacatctctctaatatggtcaatgtcgcccaattatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGC
ctctaat putative branch site (score: 3)
ttatttc putative PPT
aattatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctttttgctactattacctctcctgcttttaggacccgagtacagtatgttagtgattactttatccacatctctctaatatggtcaatgtcgcccaattatttcagATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA