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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgtagcaatatatccgatttgttgcagatgaaatgattgctactgtgctgcttgtatatagctaatatattgatacatgtttcttatatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAGCTCATTGAGTTGGTTGCTTCATCGGAATCTGGAATAATGCATTTGTTCA

Basic information

species Oryza sativa
transcript LOC_Os11g42420.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88256554|gb|CI358942.1|CI358942
EST:     GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|218496980|gb|FG962464.1|FG962464
EST:     GGCTTTGTCGTAGATGCTGCCTGCCAGGAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|58679628|gb|CK068315.1|CK068315
EST:     GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|88269323|gb|CI380621.1|CI380621
EST:     GTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|8527388|gb|AU092203.1|AU092203
EST:     GGCTTTGTCGTAGATGCTNCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|58665324|gb|CK054010.1|CK054010
EST:     GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|58693556|gb|CK082243.1|CK082243
EST:     GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|29629130|gb|CB634141.1|CB634141
EST:     GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|38468516|gb|CF952647.1|CF952647
EST:     GCTGCCTGCCAGAAACTATTCTACGATCTATGCAT                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|29627724|gb|CB632735.1|CB632735
EST:     GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
EST: gi|218482307|gb|FG954939.1|FG954939
EST:     GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAG                         GCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG
genomic: GGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGgtgatgtagc ... tatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtgctgcttgtatatagctaatatattgatacatgtttcttatatttttcagGCATCCATCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAGCTCATTGAGTTGGTTGCTTCATCGGAATCTGGAATAATGCATTTGTTCA
                          tattgat  putative branch site (score: 3)
                                      tttcttatatttttc  putative PPT
                     taatatattgatacat  TA-rich tract