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...attttcttcagtagtcttgctctatatgcattgtgatgtccatcttgacagcatcaccatataatatttttgcattaataacttctgtgtgattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT
species | Oryza sativa |
transcript | LOC_Os07g06950.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAEST: gi|66922652|gb|CX109500.1|CX109500
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAEST: gi|58659867|gb|CK048547.1|CK048547
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCGGAGAGGATGATTTTTGTTTAEST: gi|27577375|gb|CB000070.1|CB000070
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: ATAGATACCCTGATGTCCCATCCTCTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAEST: gi|58656552|gb|CK045232.1|CK045232
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAEST: gi|58674203|gb|CK062889.1|CK062889
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAEST: gi|58654004|gb|CK042684.1|CK042684
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAEST: gi|58658981|gb|CK047661.1|CK047661
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAEST: gi|58668010|gb|CK056696.1|CK056696
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: CCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAEST: gi|163920232|gb|EG710577.1|EG710577
genomic: CCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
EST: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAG GTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
genomic: ATAGATACCCTGATGTCCCATCCTTTCTGGTGTATATACGGAACCGGCAGgtacttgagg ... gattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTA
tgacagcatcaccatataatatttttgcattaataacttctgtgtgattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT
taataac putative branch site (score: 40)
ttcttc putative PPT
atataatatttttgca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcttcagtagtcttgctctatatgcattgtgatgtccatcttgacagcatcaccatataatatttttgcattaataacttctgtgtgattcttcagGTAGTCCATTTTCGTTCATTGGAGAAGCCCAAAGAGGATGATTTTTGTTTAGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - -cttgctc
- - - - - - - - - - - - -atgcatt
- - - - - - - - - - - - - - - - - - -gtccatc
- - - - - - - - - - - - - - - - - - - - - - - - cagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttctg