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...gcatgctaccaattgtgccatgtgctggaaactagcaaaacttgtagaactgctataatttggaagtacttgctgattggtttgtttgattgcttcacagGATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCTGGCATTAAG
species | Oryza sativa |
transcript | LOC_Os04g51610.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: GGATATTGCCTGAAGATGACTTGATTATGCTTGGCATAGTTGGGATAAAG GATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCTEST: gi|702134|gb|D48425.1|D48425
genomic: GGATATTGCCTGAAGATGACTTGATTATGCTTGGCATAGTTGGGATAAAGgttagttgcg ... tgcttcacagGATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCT
EST: GGATATTGCCTGAAGATGACTTGATTATGCTTGGCATAGTTGGGATAAAG GATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCTEST: gi|29685707|gb|CB681982.1|CB681982
genomic: GGATATTGCCTGAAGATGACTTGATTATGCTTGGCATAGTTGGGATAAAGgttagttgcg ... tgcttcacagGATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCT
EST: GGATATTGCCTGAAGATGACTTGATTATGCTTGGCATAGTTGGGATAAAG GATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCT
genomic: GGATATTGCCTGAAGATGACTTGATTATGCTTGGCATAGTTGGGATAAAGgttagttgcg ... tgcttcacagGATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCT
agaactgctataatttggaagtacttgctgattggtttgtttgattgcttcacagGATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCTGGCATTAAG
ttgcttc CT-rich tract
tataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgctaccaattgtgccatgtgctggaaactagcaaaacttgtagaactgctataatttggaagtacttgctgattggtttgtttgattgcttcacagGATCCTTGCCGCCCGGGTGTTAAAGATTCTGTTCGGTTATGTGCAGCAGCTGGCATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- -tgctacc
- - - - - -attgtgc
- - - - - - - - - - -gtgctgg
- - - - - - - - - - - - - - - - -agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - -aactgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat