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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttctctcctgttccttccttcctttctttgcagacgttatgttttaactatgtttgttggcaattggtagactgattgtattgatttttgcagggtagATCAAACTGGAGCAGTTCTTTTTCCTGTATAGTAATAAGAGGCTTCATGTGATGTTAGCATTGTTGAGTGTTTTCAGTCTGAGCTGCCTCAAAATCGTGT

Basic information

species Oryza sativa
transcript LOC_Os04g23890.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88531053|gb|CI459492.1|CI459492
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|88531053|gb|CI459492.1|CI459492
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|88531053|gb|CI459492.1|CI459492
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|88531053|gb|CI459492.1|CI459492
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86481914|gb|CI124547.1|CI124547
EST:     AAAAGCGAAGCCTGATGAAGACGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86481914|gb|CI124547.1|CI124547
EST:     AAAAGCGAAGCCTGATGAAGACGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86481914|gb|CI124547.1|CI124547
EST:     AAAAGCGAAGCCTGATGAAGACGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86481914|gb|CI124547.1|CI124547
EST:     AAAAGCGAAGCCTGATGAAGACGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|38478618|gb|CF962751.1|CF962751
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|38478618|gb|CF962751.1|CF962751
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|38478618|gb|CF962751.1|CF962751
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|38478618|gb|CF962751.1|CF962751
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29613428|gb|CB618441.1|CB618441
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29613428|gb|CB618441.1|CB618441
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29613428|gb|CB618441.1|CB618441
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29613428|gb|CB618441.1|CB618441
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29618974|gb|CB623986.1|CB623986
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29618974|gb|CB623986.1|CB623986
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29618974|gb|CB623986.1|CB623986
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29618974|gb|CB623986.1|CB623986
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29612811|gb|CB617824.1|CB617824
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29612811|gb|CB617824.1|CB617824
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29612811|gb|CB617824.1|CB617824
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29612811|gb|CB617824.1|CB617824
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|25806004|gb|CA761965.1|CA761965
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|25806004|gb|CA761965.1|CA761965
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|25806004|gb|CA761965.1|CA761965
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|25806004|gb|CA761965.1|CA761965
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29618297|gb|CB623309.1|CB623309
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29618297|gb|CB623309.1|CB623309
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29618297|gb|CB623309.1|CB623309
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29618297|gb|CB623309.1|CB623309
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29626656|gb|CB631667.1|CB631667
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29626656|gb|CB631667.1|CB631667
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29626656|gb|CB631667.1|CB631667
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29626656|gb|CB631667.1|CB631667
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29619193|gb|CB624205.1|CB624205
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29619193|gb|CB624205.1|CB624205
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29619193|gb|CB624205.1|CB624205
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29619193|gb|CB624205.1|CB624205
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29620201|gb|CB625213.1|CB625213
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29620201|gb|CB625213.1|CB625213
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29620201|gb|CB625213.1|CB625213
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29620201|gb|CB625213.1|CB625213
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29630592|gb|CB635601.1|CB635601
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29630592|gb|CB635601.1|CB635601
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29630592|gb|CB635601.1|CB635601
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29630592|gb|CB635601.1|CB635601
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29615866|gb|CB620878.1|CB620878
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29615866|gb|CB620878.1|CB620878
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29615866|gb|CB620878.1|CB620878
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29615866|gb|CB620878.1|CB620878
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29679663|gb|CB675938.1|CB675938
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29679663|gb|CB675938.1|CB675938
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29679663|gb|CB675938.1|CB675938
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29679663|gb|CB675938.1|CB675938
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29685421|gb|CB681696.1|CB681696
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29685421|gb|CB681696.1|CB681696
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29685421|gb|CB681696.1|CB681696
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29685421|gb|CB681696.1|CB681696
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|88253359|gb|CI351985.1|CI351985
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|88253359|gb|CI351985.1|CI351985
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|88253359|gb|CI351985.1|CI351985
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|88253359|gb|CI351985.1|CI351985
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29646470|gb|CB651477.1|CB651477
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29646470|gb|CB651477.1|CB651477
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29646470|gb|CB651477.1|CB651477
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29646470|gb|CB651477.1|CB651477
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|88906896|gb|CI375968.1|CI375968
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGGGTAG                     
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTT-A----AGgtgaggcaac ... tgcagg
EST: gi|86861209|gb|CI326647.1|CI326647
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86861209|gb|CI326647.1|CI326647
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86861209|gb|CI326647.1|CI326647
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86861209|gb|CI326647.1|CI326647
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|38480878|gb|CF964967.1|CF964967
EST:     CAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAGGGTAG                     
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTT-A----AGgtgaggcaac ... tgcagg
EST: gi|29685192|gb|CB681467.1|CB681467
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         ATCAAACTGGAGCAGTTCTTTTTCCTGTATAGTAATAAGAGGCTTCATGTG
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtagATCAAACTGGAGCAGTTCTTTTTCCTGTATAGTAATAAGAGGCTTCATGTG
EST: gi|86903055|gb|CI324525.1|CI324525
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86903055|gb|CI324525.1|CI324525
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86903055|gb|CI324525.1|CI324525
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|86903055|gb|CI324525.1|CI324525
EST:     AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29619194|gb|CB624206.1|CB624206
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29619194|gb|CB624206.1|CB624206
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29619194|gb|CB624206.1|CB624206
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-
EST: gi|29619194|gb|CB624206.1|CB624206
EST:     AAAAGCGAAGCCTGACGAAGATGTTCCCCTAAATCTTGATACATTTTAAG                         G
genomic: AAAAGCGAAGCCTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGgtgaggcaac ... tgcagggtag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactatgtttgttggcaattggtagactgattgtattgatttttgcagggtagATCAAACTGGAGCAGTTCTTTTTCCTGTATAGTAATAAGAGGCTTCATGTGATGTTAGCATTGTTGAGTGTTTTCAGTCTGAGCTGCCTCAAAATCGTGT
                                         tttttgc  CT-rich tract
                               attgtattgattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttctctcctgttccttccttcctttctttgcagacgttatgttttaactatgtttgttggcaattggtagactgattgtattgatttttgcagggtagATCAAACTGGAGCAGTTCTTTTTCCTGTATAGTAATAAGAGGCTTCATGTGATGTTAGCATTGTTGAGTGTTTTCAGTCTGAGCTGCCTCAAAATCGTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - ctcctgt
- - - - - - - ccttcct
- - - - - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg