1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...acagcctttactgtctgctaatgcttcatatgaacaccttgataatgtgaatggtggcctgcatgagtttcaatggctaacttttgtgcggcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAGAGTTCTACCAGCAGCCAGGGTGGAAACAAGAACTACAGAAAAGGAAGC
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|16754192|gb|BM038571.1|BM038571
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TCTACCAACCCTGTTCGTGGGATAGATTCCCAACCCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|86479378|gb|CI122011.1|CI122011
genomic: TCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCGAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|87022895|gb|CI269831.1|CI269831
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|89193062|gb|CI050360.1|CI050360
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|86597638|gb|CI274629.1|CI274629
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|86437319|gb|CI119041.1|CI119041
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|218505177|gb|FG951529.1|FG951529
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|86502671|gb|CI145304.1|CI145304
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|29669713|gb|CB665988.1|CB665988
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|86480869|gb|CI123502.1|CI123502
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTTGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|58667525|gb|CK056211.1|CK056211
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: AGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATGACGAAGGAAEST: gi|9864985|gb|AU100735.1|AU100735
genomic: AGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTAC-AACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|86252596|gb|CI003932.1|CI003932
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|86480878|gb|CI123511.1|CI123511
genomic: TTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|88260846|gb|CI361434.1|CI361434
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: CAACCCTGTTCCTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAEST: gi|29674448|gb|CB670723.1|CB670723
genomic: CAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
tgtgaatggtggcctgcatgagtttcaatggctaacttttgtgcggcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAGAGTTCTACCAGCAGCCAGGGTGGAAACAAGAACTACAGAAAAGGAAGC
ggctaac putative branch site (score: 2)
cttctgc putative PPT
taactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagcctttactgtctgctaatgcttcatatgaacaccttgataatgtgaatggtggcctgcatgagtttcaatggctaacttttgtgcggcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAAGAGTTCTACCAGCAGCCAGGGTGGAAACAAGAACTACAGAAAAGGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA