1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tcattgactaactgcaagaacagtagatgaagacgatgcttgcaaaatttagagttaacaaatatttctttttgttgatgttggatcttgccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGAAGGAGCATCAGAATTTTCCGCTGATAAAGATGCCCCAGGAGATGGGGC
species | Oryza sativa |
transcript | LOC_Os03g24220.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|58652740|gb|CK041420.1|CK041420
genomic: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAGgtatgacttg ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|38479352|gb|CF963481.1|CF963481
genomic: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAGgtatgacttg ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|163923599|gb|EG713316.1|EG713316
genomic: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAGgtatgacttg ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|427570|gb|D23638.1|D23638
genomic: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAGgtatgacttg ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTNCCCAATGGCAG GTGATGCAGATACAGCTGEST: gi|38480301|gb|CF964390.1|CF964390
genomic: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAGgtatgacttg ... ccaatttcagGTGATGCAGATACAGCTG
EST: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAG GTGATGCAGATAGAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: TGAGGGTTCATCTCAAAGCCCACGCATAGGTAGGTCTTCCCCAATGGCAGgtatgacttg ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
aatttagagttaacaaatatttctttttgttgatgttggatcttgccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGAAGGAGCATCAGAATTTTCCGCTGATAAAGATGCCCCAGGAGATGGGGC
tcttgcc CT-rich tract
ttaacaaatatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattgactaactgcaagaacagtagatgaagacgatgcttgcaaaatttagagttaacaaatatttctttttgttgatgttggatcttgccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGAAGGAGCATCAGAATTTTCCGCTGATAAAGATGCCCCAGGAGATGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG