1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtcagtatgttaaccgtatctttcttctgctgaaatgtctggagcaaattcaactgtattactgataattattaatgtgcttaacttcaatgcgtgcttcctatgttaaattatttctttcatactagatctaacaaacaatttgacttacagGCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTAATTAATGAAATAAGACGCCAGAGATGTTCTTATTTAAG
species | Oryza sativa |
transcript | LOC_Os11g29200.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCAACAAATATTTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAG GCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTAEST: gi|88846448|gb|CI373216.1|CI373216
genomic: TCCTCGAACAAATATTTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAGgtcagtatgt ... tgacttacagGCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTA
EST: TCCTCGAACAAATAGTTGGTGTGTCTTCTTTGGCTGCAATACCAAGTCAG GCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAA-GTAAATGAAGTAEST: gi|66913440|gb|CX100288.1|CX100288
genomic: TCCTCGAACAAATATTTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAGgtcagtatgt ... tgacttacagGCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTA
EST: TCCTCGAACAAATATTTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAG GCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTAEST: gi|33680475|gb|CF308714.1|CF308714
genomic: TCCTCGAACAAATATTTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAGgtcagtatgt ... tgacttacagGCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTA
EST: TCCTCGAACAAATATTTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAG GCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTAEST: gi|88691349|gb|CI733932.1|CI733932
genomic: TCCTCGAACAAATATTTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAGgtcagtatgt ... tgacttacagGCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTA
EST: TCCTCGAACAAATATCTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAG GCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTA
genomic: TCCTCGAACAAATATTTGGTGTGTCTTCTTTGGCTGCATTACCAAGTCAGgtcagtatgt ... tgacttacagGCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTA
tcctatgttaaattatttctttcatactagatctaacaaacaatttgacttacagGCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTAATTAATGAAATAAGACGCCAGAGATGTTCTTATTTAAG
ttaaattatttctttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtatgttaaccgtatctttcttctgctgaaatgtctggagcaaattcaactgtattactgataattattaatgtgcttaacttcaatgcgtgcttcctatgttaaattatttctttcatactagatctaacaaacaatttgacttacagGCTGTGTTGGAGCAATTTGACAATGAACTGTCACGGAAGGTAAATGAAGTAATTAATGAAATAAGACGCCAGAGATGTTCTTATTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG