1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...ataaaataaggcagcagtctaatgtgattgctttgtagatgcccatatcctcgattttttaatattttttcagctaattttgttactactattttttcagGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAG
species | Oryza sativa |
transcript | LOC_Os08g34970.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CTAGGACGTTTTCTCCCCGTGTTCCGGAGAACCAAATTGATGCCAGAAAA GAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTEST: gi|25806151|gb|CA762112.1|CA762112
genomic: CTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAgtaaccatct ... attttttcagGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATT
EST: CTAGGACGTTTTCTCNCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAA GAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTEST: gi|29642984|gb|CB647991.1|CB647991
genomic: CTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAgtaaccatct ... attttttcagGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATT
EST: CTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAA GAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTEST: gi|163920017|gb|EG709823.1|EG709823
genomic: CTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAgtaaccatct ... attttttcagGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATT
EST: CTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAA GAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTEST: gi|58657979|gb|CK046659.1|CK046659
genomic: CTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAgtaaccatct ... attttttcagGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATT
EST: CTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAA GAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATT
genomic: CTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAgtaaccatct ... attttttcagGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATT
tatcctcgattttttaatattttttcagctaattttgttactactattttttcagGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAG
agctaat putative branch site (score: 20)
ctattttttc putative PPT
attttttaatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaaataaggcagcagtctaatgtgattgctttgtagatgcccatatcctcgattttttaatattttttcagctaattttgttactactattttttcagGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- aaaataa
- - - - - gcagcag
- - - - - - - - - - - - - - tgctttg
- - - - - - - - - - - - - - - - - - -gatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttact