1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...acggtctctaatgaaaaagagtattttttgggggtttgttgagtcaggggtgcagatgtgactgtaacaccaggagtgctaatatgtttcatgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAAATCGTGCGAATCCCGACTCTGCAGTACCCATCTAAAGTCAGTTCTATA
species | Oryza sativa |
transcript | LOC_Os08g34060.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|86870886|gb|CI326712.1|CI326712
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|88958682|gb|CI096197.1|CI096197
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTTGCCTAEST: gi|88964786|gb|CI084784.1|CI084784
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|29630515|gb|CB635524.1|CB635524
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|29622067|gb|CB627078.1|CB627078
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|29623531|gb|CB628542.1|CB628542
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|86430572|gb|CI082995.1|CI082995
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|12622371|gb|AU172584.1|AU172584
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|88252721|gb|CI351149.1|CI351149
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|86862408|gb|CI345515.1|CI345515
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|88271238|gb|CI387291.1|CI387291
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAEST: gi|86499063|gb|CI141696.1|CI141696
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
aggggtgcagatgtgactgtaacaccaggagtgctaatatgtttcatgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAAATCGTGCGAATCCCGACTCTGCAGTACCCATCTAAAGTCAGTTCTATA
tgctaat putative branch site (score: 2)
tgttttc putative PPT
taatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggtctctaatgaaaaagagtattttttgggggtttgttgagtcaggggtgcagatgtgactgtaacaccaggagtgctaatatgtttcatgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAAATCGTGCGAATCCCGACTCTGCAGTACCCATCTAAAGTCAGTTCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG