1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tcattattctcttctatctttatttcttctcagcgtaaaatcagatcacatgattggctttcgttaccaactcactgaatttccaacttacctctttcagATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCATTTGATCCATCACAAGATGTTGATCCATCTGCTGCTGGAACAAACACGGG
species | Oryza sativa |
transcript | LOC_Os08g32920.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGGATCAG ATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCATEST: gi|27920599|gb|CB096407.1|CB096407
genomic: CTGCTGGATCAGgtaaccatat ... cctctttcagATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCAT
EST: TGATAATCGCTCAGCTACTTCTAATTGGTCGAATGATTCTGCTGGATCAG ATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCATEST: gi|86836203|gb|CI346205.1|CI346205
genomic: TGATAATCGCTCAGCTACTTCTAATTGGTCGAATGATTCTGCTGGATCAGgtaaccatat ... cctctttcagATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCAT
EST: TGATAATCGCTCAGCTACTTCTAATTGGTCGAATGATTCTGCTGGATCAG ATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCATEST: gi|87016441|gb|CI273651.1|CI273651
genomic: TGATAATCGCTCAGCTACTTCTAATTGGTCGAATGATTCTGCTGGATCAGgtaaccatat ... cctctttcagATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCAT
EST: TGATAATCGCTCAGCTACTTCTAATTGGTCGAATGATTCTGCTGGATCGG ATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCATEST: gi|86835560|gb|CI348017.1|CI348017
genomic: TGATAATCGCTCAGCTACTTCTAATTGGTCGAATGATTCTGCTGGATCAGgtaaccatat ... cctctttcagATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCAT
EST: ATTGGTCGAATGATTCTGCTGGATCAG ATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCAT
genomic: ATTGGTCGAATGATTCTGCTGGATCAGgtaaccatat ... cctctttcagATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCAT
tcacatgattggctttcgttaccaactcactgaatttccaacttacctctttcagATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCATTTGATCCATCACAAGATGTTGATCCATCTGCTGCTGGAACAAACACGGG
aacttac putative branch site (score: 1)
cttacctctttc CT-rich tract
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattattctcttctatctttatttcttctcagcgtaaaatcagatcacatgattggctttcgttaccaactcactgaatttccaacttacctctttcagATAGTAATCCAGGGAGCAGTGGCCAGTCTGGAGACGAATGGAAATCTGCATTTGATCCATCACAAGATGTTGATCCATCTGCTGCTGGAACAAACACGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - aaaatcag
- - - - - - - - - - - - - - - - - - - - - - - -acatgat