1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...aatgctcagtgaccttcaactaactgaagattaaaatttaaacagctgagaacttgtttcagtgataattgattccttctgtcttaaccatatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTTCGCAGTCAATGAATATGCTTGTATCTTCAGGTGCTGATGCTCAG
species | Oryza sativa |
transcript | LOC_Os08g06480.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAG GTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTEST: gi|33793091|gb|CF322427.1|CF322427
genomic: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGgtgagtgata ... tatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
EST: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAG GTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTEST: gi|58596216|gb|CK006744.1|CK006744
genomic: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGgtgagtgata ... tatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
EST: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAG GTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTEST: gi|58687154|gb|CK075841.1|CK075841
genomic: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGgtgagtgata ... tatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
EST: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAG GTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTEST: gi|58667666|gb|CK056352.1|CK056352
genomic: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGgtgagtgata ... tatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
EST: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAG GTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTEST: gi|27577716|gb|CB000411.1|CB000411
genomic: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGgtgagtgata ... tatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
EST: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAG GTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTEST: gi|58608562|gb|CK036595.1|CK036595
genomic: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGgtgagtgata ... tatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
EST: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAG GTTAAAAGCAAGCTTAAGGGACATGCAAAAAAGATCACTGGGCTGGCATTTEST: gi|58674933|gb|CK063620.1|CK063620
genomic: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGgtgagtgata ... tatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
EST: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAG GTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
genomic: TTGGAATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGgtgagtgata ... tatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTT
ctgagaacttgtttcagtgataattgattccttctgtcttaaccatatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTTCGCAGTCAATGAATATGCTTGTATCTTCAGGTGCTGATGCTCAG
tcttaac putative branch site (score: 70)
ataattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgctcagtgaccttcaactaactgaagattaaaatttaaacagctgagaacttgtttcagtgataattgattccttctgtcttaaccatatggcatagGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTTCGCAGTCAATGAATATGCTTGTATCTTCAGGTGCTGATGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
aatgctc
- - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - cagctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca