1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtatataggttggcttgttaacttatataaaagatcaatacagaataaagtagattaatgtacttggggtgttctatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAAACAATCAATGACCCAACTAACCCGAAGCATTATTGGAGATTCC
species | Oryza sativa |
transcript | LOC_Os07g46790.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAG GACCTGCTTGCACTTAAAGACAAGTACA-CACAAGACCAGCAAAAGAGGAAEST: gi|86899544|gb|CI327446.1|CI327446
genomic: TTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAGgtatataggt ... tatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAA
EST: ATGTGGGCAATCTTCCCACTACAG GACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAAEST: gi|86481864|gb|CI124497.1|CI124497
genomic: ATGTGGGCAATCTTCCCACTACAGgtatataggt ... tatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAA
EST: TTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAG GATCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAAEST: gi|88263462|gb|CI367236.1|CI367236
genomic: TTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAGgtatataggt ... tatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAA
EST: ATCTTCCCACTACAG GACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAAEST: gi|58589934|gb|CF988242.1|CF988242
genomic: ATCTTCCCACTACAGgtatataggt ... tatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAA
EST: TTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAG GACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAAEST: gi|55408542|gb|CV720918.1|CV720918
genomic: TTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAGgtatataggt ... tatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAA
EST: TTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAG GACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAA
genomic: TTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAGgtatataggt ... tatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAA
aaagatcaatacagaataaagtagattaatgtacttggggtgttctatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAAACAATCAATGACCCAACTAACCCGAAGCATTATTGGAGATTCC
gattaat putative branch site (score: 74)
ttctattt putative PPT
aataaagtagattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataggttggcttgttaacttatataaaagatcaatacagaataaagtagattaatgtacttggggtgttctatttgtcagGACCTGCTTGCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAAACAATCAATGACCCAACTAACCCGAAGCATTATTGGAGATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT