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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgacgttagtcattttccgcactgtggatttgatagattgctgagtataattttttattgctttttatcctaattattaattactgttcaatgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGATCAAGACGAGGCAGAATTTCAGAATGTAAACGAGTG

Basic information

species Oryza sativa
transcript LOC_Os07g46370.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46370.1 (Oryza sativa), 3'ss of exon 21
lower sequence: GRMZM2G035985_T01 (Zea mays), 3'ss of exon 21
--------------tgacgtt----agtcattttccgcactgtggatttgatagattgctga------gtataattttttattgctttttatcctaattattaattactgttcaatgttgg---cagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGATCAAGACGAGGCAGAATTTCAGAATGTAAACGAGTG-
              |||  ||     ||  | || ||| ||||    |  |||   |  |||      | |||   |||     | |    | |||| | |     ||||  |||||||||   ||||||||  | || || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||   || 
gtagattggacggttgatctttttaggttctgttgcgc-ctgtcttctccatatccttttgaaagtttggataccatttccccccctcgacttctaactctctgcaactgcacaatgttggtgtcagGTACTCTTAACGACAAGCGACTGGGACGAGTGCAACTTCTGGCTTGCGGCATTGAAGCGGATGATCAAGACAAGGCAGAATTTCAGAATGTAAACCT-TGT

upper sequence: LOC_Os07g46370.1 (Oryza sativa), 3'ss of exon 21
lower sequence: GRMZM2G152963_T02 (Zea mays), 3'ss of exon 21
-------tgacgttagtcattt----tccgcactgtggatttgatagat-tgctgagtataattttt---tattgcttttta------tcctaattattaattactgttcaatgttgg---cagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGATCAAGACGAGGCAGAATTTCAGAATGTAAACGAGTG-
        ||||||  || |||    || | |  ||   | |  |  || | ||   |  || ||||   |||   || ||       | |||| |||     ||||  |||| ||||   ||||||||  | ||||| || |||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||   || 
gtagattggacgttgatcttttaggttctgtagagtctgtcttctccatgttctttttggaagttttggatatcagttcttccttgacttctaactatctgcaactgcacaattttggtgtcagGTACTCTTAACAACAAGTGACTGGGACGAGTGCAACTTCTGGCTCGCGGCATTGAAGCGGATGATCAAGACAAGGCAGAATTTCAGAATGTAAACCT-TGT

upper sequence: LOC_Os07g46370.1 (Oryza sativa), 3'ss of exon 21
lower sequence: AT3G63460.1 (Arabidopsis thaliana), 3'ss of exon 21
tgacgttagtcattttccgcactgtggatttgatagattgctgagtataattttttattgctttttatcctaattattaattactgttcaatgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGAT---CAAGACGAGGCAGAATTTCAGAATGTAAACGAGTG
        || |  |     | ||     ||    | |   ||   || ||||  | ||  |  | |||    ||||| |   |      |      |||||||||||||| || ||||| |||||||| |||||||||||||| ||  || | ||||| |||||   |||| | ||||| ||| |  |    | |   |   
--------gtaagctagtaaattgatctcttctgggttccttgtagatgatttcgtgtt--taataatcagttttattgacctcaaaaacaaacaaacagGTACTTCTGACTACCAGCGAATGGGACGAATGCAACTTCTGGCTGGCAACACTAAAGCGGATGATGGTCAAGGCCAGGCAAAATGTGCGGTGATTATTTA---

upper sequence: LOC_Os07g46370.1 (Oryza sativa), 3'ss of exon 21
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 21
tgacgttagtcattttccgcactgtggatttgatagattgctgagtataattttttattgctttttatcctaattattaattactgttcaatgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGATCAAGACGAGGCAGAATTTCAGAATGTAAACGAGTG
           ||||   |   |    || |   |  | |   | |  || |    | ||   ||     |  |  ||  ||| | |||   |  |  |||||||||| || || || || ||||| ||||||||||||||||| ||  || | ||| | ||||||||||| ||||||||| | ||| |      ||| |
-------gtatatttctggggattaaaatattcaacttaggcaactccaaatgagaaatgacattgtatttggtctttttttattcttcctgg--gatagGTACTTCTTACGACCAGTGAGTGGGATGAGTGCAACTTCTGGCTAGCAACACTAAAGAGGATGATCAAGACAAGGCAGAATGTGAGATTAAGTTAGAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86517632|gb|CI157838.1|CI157838
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|89181177|gb|CI045260.1|CI045260
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86517621|gb|CI157827.1|CI157827
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29683023|gb|CB679298.1|CB679298
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29640393|gb|CB645402.1|CB645402
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|218503311|gb|FG967850.1|FG967850
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|89183334|gb|CI045899.1|CI045899
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86480375|gb|CI123008.1|CI123008
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|42592168|gb|CK738654.1|CK738654
EST:     CCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: CCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29624892|gb|CB629903.1|CB629903
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86494045|gb|CI136678.1|CI136678
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86425032|gb|CI070129.1|CI070129
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGGCTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|58692476|gb|CK081163.1|CK081163
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86477301|gb|CI119934.1|CI119934
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTCGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29624929|gb|CB629940.1|CB629940
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29689690|gb|CB685965.1|CB685965
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|88841270|gb|CI080724.1|CI080724
EST:     GCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: GCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|87014149|gb|CI273339.1|CI273339
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|218493040|gb|FG964277.1|FG964277
EST:     TAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86431180|gb|CI083603.1|CI083603
EST:     TTTGCAATGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|58588500|gb|CF986808.1|CF986808
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|88989147|gb|CI042260.1|CI042260
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|58674200|gb|CK062886.1|CK062886
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86540711|gb|CI180917.1|CI180917
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86481821|gb|CI124454.1|CI124454
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86866449|gb|CI343419.1|CI343419
EST:     TTTCCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGAGCTGGGACGAGTGCAACTTCTGGCTTGCCGC
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGA-CTGGGACGAGTGCAACTTCTGGCTTGCCGC
EST: gi|86430370|gb|CI082793.1|CI082793
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86478202|gb|CI120835.1|CI120835
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86864485|gb|CI334762.1|CI334762
EST:     TTTGCACTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86495238|gb|CI137871.1|CI137871
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|218487220|gb|FG954422.1|FG954422
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86827361|gb|CI270994.1|CI270994
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29626245|gb|CB631256.1|CB631256
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|89183505|gb|CI046070.1|CI046070
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86518629|gb|CI158835.1|CI158835
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|18385932|gb|BM419131.1|BM419131
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86415387|gb|CI069790.1|CI069790
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86597084|gb|CI272679.1|CI272679
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29640392|gb|CB645401.1|CB645401
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29623622|gb|CB628633.1|CB628633
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86477735|gb|CI120368.1|CI120368
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|58684453|gb|CK073140.1|CK073140
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|29687144|gb|CB683419.1|CB683419
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
EST: gi|86501433|gb|CI144066.1|CI144066
EST:     TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAG                         GTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA
genomic: TTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 94

ACTCAATTCTGGGGATATATCTCCAAACGTTTCATCAAAACTCATTCAGCTTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGgtattattaa ... atgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGATCAAGACGAGGCAGAATTTCAGAATGTAAACGAGTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataattttttattgctttttatcctaattattaattactgttcaatgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGATCAAGACGAGGCAGAATTTCAGAATGTAAACGAGTG
                             tattaat  putative branch site (score: 94)
     ttttttattgcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgacgttagtcattttccgcactgtggatttgatagattgctgagtataattttttattgctttttatcctaattattaattactgttcaatgttggcagGTACTTCTGACAACGAGCGACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGATCAAGACGAGGCAGAATTTCAGAATGTAAACGAGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - gcactgt
- - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtt