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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcaaatctaaaataaacatttttatctttgttttgccagttattgtgatctcatgctgttgcattcaagtttcatatcagttcatttcatttgacttcagGTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTTTGCTGACCCTTTCACCATATCACTCTGACCGGTTCCTTCTGTCCCC

Basic information

species Oryza sativa
transcript LOC_Os06g48640.2
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4714418|gb|AU058385.1|AU058385
EST:     TTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGT                         GTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTT-GCTGACCCTT
genomic: TTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGTgtaagttcaa ... ttgacttcagGTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTTTGCTGACCCTT
EST: gi|29614662|gb|CB619675.1|CB619675
EST:     TTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGT                         GTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTTTGCTGACCCTT
genomic: TTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGTgtaagttcaa ... ttgacttcagGTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTTTGCTGACCCTT
EST: gi|58590730|gb|CF989038.1|CF989038
EST:     TTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGT                         GTGAGGATTGCTCAAGGTCTGGTTCACCTTGGGAAGGGTTTGCTGACCCTT
genomic: TTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGTgtaagttcaa ... ttgacttcagGTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTTTGCTGACCCTT
EST: gi|4714419|gb|AU058386.1|AU058386
EST:     TTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGT                         GTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTT-GCTGACCCTT
genomic: TTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGTgtaagttcaa ... ttgacttcagGTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTTTGCTGACCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctcatgctgttgcattcaagtttcatatcagttcatttcatttgacttcagGTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTTTGCTGACCCTTTCACCATATCACTCTGACCGGTTCCTTCTGTCCCC
                                           atttgac  putative branch site (score: 4)
                                       tttcattt  CT-rich tract
                                      atttcattt  TA-rich tract