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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgctcgtactgcatgtctactcttataatttcctttctccactctgttggttcaatttggagtatctttgtttcaaaataataataataattcgagtgccttttaacacaaacatgtatgctgcttcatattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGACTACTCACAATAATTACACGATTTTTTCATAGTCTAGTATATATACCAA

Basic information

species Oryza sativa
transcript LOC_Os06g04450.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86598797|gb|CI355414.1|CI355414
EST:     ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACC-TTT--T--G                         AAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
genomic: ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAGgtacctgctc ... catattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
EST: gi|86602710|gb|CI357074.1|CI357074
EST:     ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTG--AA-                         A--CCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
genomic: ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAGgtacctgctc ... catattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
EST: gi|86871614|gb|CI342413.1|CI342413
EST:     GTTTGCAAATCAACCGATGAAACAAACTTGTCACC-TTT--T--G                         AAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
genomic: GTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAGgtacctgctc ... catattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
EST: gi|86486040|gb|CI128673.1|CI128673
EST:     ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTG--AA-                         A--CCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
genomic: ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAGgtacctgctc ... catattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
EST: gi|88251813|gb|CI349050.1|CI349050
EST:     ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACC-TTT--T--G                         AAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
genomic: ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAGgtacctgctc ... catattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
EST: gi|88255329|gb|CI354153.1|CI354153
EST:     ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAG                         -AACCCATTGGTACGAACAGTTAGAAACGTTGGATGTCATCAATGAGCTGG
genomic: ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAGgtacctgctc ... catattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGA-CTGG
EST: gi|88257802|gb|CI360388.1|CI360388
EST:     ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACC-TTT--T--G                         AAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA
genomic: ACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAGgtacctgctc ... catattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taataataattcgagtgccttttaacacaaacatgtatgctgcttcatattgcagAAACCCATTGCTACGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGACTACTCACAATAATTACACGATTTTTTCATAGTCTAGTATATATACCAA
                   ttttaac  putative branch site (score: 2)
                                       ctgcttc  putative PPT
                   ttttaaca  TA-rich tract