1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tcattgactaactgcaagaacagtagatgaagacgatgcttgcaaaatttagagttaacaaatatttctttttgttgatgttggatcttgccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGAAGGAGCATCAGAATTTTCCGCTGATAAAGATGCCCCAGGAGATGGGGC
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|38568672|gb|CD670887.1|CD670887
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|29669712|gb|CB665987.1|CB665987
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|58673715|gb|CK062401.1|CK062401
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|29669713|gb|CB665988.1|CB665988
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: TGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|58672631|gb|CK061317.1|CK061317
genomic: TGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGEST: gi|58612287|gb|CK039999.1|CK039999
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
aatttagagttaacaaatatttctttttgttgatgttggatcttgccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGAAGGAGCATCAGAATTTTCCGCTGATAAAGATGCCCCAGGAGATGGGGC
tcttgcc CT-rich tract
ttaacaaatatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattgactaactgcaagaacagtagatgaagacgatgcttgcaaaatttagagttaacaaatatttctttttgttgatgttggatcttgccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTGAAGGAGCATCAGAATTTTCCGCTGATAAAGATGCCCCAGGAGATGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG