1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtattgttaacactcccaatgcacagcagaaaaaatataaaatttgttgatcttacaaactataagcaatgttgtgttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAGCAATGGCTGCCTTAACATCAGCGTTCAATCCATCAGCAAAACCCAAAA
species | Oryza sativa |
transcript | LOC_Os03g24220.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|396941448|gb|HO188657.1|HO188657
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|33794451|gb|CF323110.1|CF323110
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|58661440|gb|CK050120.1|CK050120
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCGTCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|38477625|gb|CF961758.1|CF961758
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATGGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|58652740|gb|CK041420.1|CK041420
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|56157785|gb|C26501.2|C26501
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAAGCGCGCTTTEST: gi|427570|gb|D23638.1|D23638
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCA-GCGCGCTT-
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGNGCTTCAEST: gi|58652765|gb|CK041445.1|CK041445
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGAATTCAAACCATCTTCCCAAAAGAATAAG GGTAATGATAGGGCTAAAAGCTCTGATGGTGG
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGG
aaaatataaaatttgttgatcttacaaactataagcaatgttgtgttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAGCAATGGCTGCCTTAACATCAGCGTTCAATCCATCAGCAAAACCCAAAA
atcttac putative branch site (score: 3)
tgttcttttt putative PPT
ataaaatttgttgat TA-rich tract