1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...ttacacccatcatttcacactacatgtctacttatcttatgcagctgctggctggtaatttatttcaaattgataatatgtattccctttgcacctccagAAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAAGTGCTTATGGATTTTTTCAGAGAACACATTAATGTGACA
species | Oryza sativa |
transcript | LOC_Os02g51430.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAG AAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAAEST: gi|89171423|gb|CI720482.1|CI720482
genomic: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAGgtttgcagaa ... gcacctccagAAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAA
EST: CTTGCCTGGAGCAAACAATCGTGGTATACGTTGATCATCTCCTTACTCAC AAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGGTTGATGAAGAAEST: gi|88674057|gb|CI728170.1|CI728170
genomic: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAGgtttgcagaa ... gcacctccagAAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAA
EST: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAG AAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAEST: gi|44670727|gb|CR284161.1|CR284161
genomic: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAGgtttgcagaa ... gcacctccagAAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAA
EST: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAG AAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAAEST: gi|86855814|gb|CI271033.1|CI271033
genomic: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAGgtttgcagaa ... gcacctccagAAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAA
EST: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAG AAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAA
genomic: CTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAGgtttgcagaa ... gcacctccagAAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAA
tgctggctggtaatttatttcaaattgataatatgtattccctttgcacctccagAAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAAGTGCTTATGGATTTTTTCAGAGAACACATTAATGTGACA
aattgat putative branch site (score: 9)
ttccctttgcacctcc putative PPT
taatttatttcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacacccatcatttcacactacatgtctacttatcttatgcagctgctggctggtaatttatttcaaattgataatatgtattccctttgcacctccagAAAGGCCATATAAAAGAAGAAACAATCGAAAGGATGAGGCTTGATGAAGAAGTGCTTATGGATTTTTTCAGAGAACACATTAATGTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT