1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...taatggtgaatgattttgtattttcgttcatatttctttggctacctggtaggaaatatcaagcacttaatcctgactaaacaaaacaaatcatttgcagAGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGTTCGATTCTGCATCAAATGGCTCTGTTGATCGATCCAGTTCACACAATGA
species | Oryza sativa |
transcript | LOC_Os02g50550.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TGACAATAGAGCTTCTGTTGCCTCGTATACCAATGATAGTTCTGGAGCTG CGAGTAGCCCACGGACCTCTEST: gi|38477368|gb|CF961501.1|CF961501
genomic: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTGgtaagttggc ... tcatttgcagAGAGTAGCCCACGGACCTCT
EST: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTG AGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGTEST: gi|87020157|gb|CI277889.1|CI277889
genomic: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTGgtaagttggc ... tcatttgcagAGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGT
EST: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTG AGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGTEST: gi|27334466|gb|CA882917.1|CA882917
genomic: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTGgtaagttggc ... tcatttgcagAGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGT
EST: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTG AGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGTEST: gi|86831118|gb|CI295595.1|CI295595
genomic: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTGgtaagttggc ... tcatttgcagAGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGT
EST: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTG AGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGTEST: gi|33681446|gb|CF309685.1|CF309685
genomic: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTGgtaagttggc ... tcatttgcagAGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGT
EST: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTG AGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGT
genomic: TGACAATAGAGCTTCTGTTGCATCGTATACCAATGATAGTTCTGGAGCTGgtaagttggc ... tcatttgcagAGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGT
ctggtaggaaatatcaagcacttaatcctgactaaacaaaacaaatcatttgcagAGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGTTCGATTCTGCATCAAATGGCTCTGTTGATCGATCCAGTTCACACAATGA
gactaaa putative branch site (score: 1)
taaacaaaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatggtgaatgattttgtattttcgttcatatttctttggctacctggtaggaaatatcaagcacttaatcctgactaaacaaaacaaatcatttgcagAGAGTAGCCCACGGACCTCTGGCCAGTCAGGTGAGGACTGGAGGTCTGCGTTCGATTCTGCATCAAATGGCTCTGTTGATCGATCCAGTTCACACAATGA
- - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - tacctgg
- - - - - - - - - - - - - - - - - - - - - - - - - aggaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa