1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtatatgatctcttcggtgtgtagcacaatcaattgttattaccctagagcataggtcatgagttactttccataaaaatatgtgttattctatagttgtgacgttaaaatttttgaattttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTCCACCCTCAAGACAATAATATCATTGCTATTGGAATGGAGGACTCTACCA
species | Oryza sativa |
transcript | LOC_Os08g06480.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: GTTCAACATGATGACATTCAA- GTCATGACTACTTTCATGGCACCTCCACCTGGCTGCAACTTTCCTTGCATTEST: gi|33793091|gb|CF322427.1|CF322427
genomic: GTTCAACATGATGACATTCAAGgtatatgatc ... tttttcacagGTCATGACTACTTTCATGGCACCTCCACCT-GCTGCAACTTTCCTTGCATT
EST: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAG GTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTCEST: gi|58596216|gb|CK006744.1|CK006744
genomic: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAGgtatatgatc ... tttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTC
EST: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAG GTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTCEST: gi|300216043|gb|HO088669.1|HO088669
genomic: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAGgtatatgatc ... tttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTC
EST: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAG GTCATGACTACTTTCATGGCACCTCCACCEST: gi|58667666|gb|CK056352.1|CK056352
genomic: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAGgtatatgatc ... tttttcacagGTCATGACTACTTTCATGGCACCTCCACC
EST: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAG GTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTCEST: gi|27577716|gb|CB000411.1|CB000411
genomic: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAGgtatatgatc ... tttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTC
EST: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATCATGACATTCAAG GTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTCEST: gi|58608562|gb|CK036595.1|CK036595
genomic: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAGgtatatgatc ... tttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTC
EST: GTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAG GTCATGAGGACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTCEST: gi|58674933|gb|CK063620.1|CK063620
genomic: GTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAGgtatatgatc ... tttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTC
EST: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAG GTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTC
genomic: TGTCTGCATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAGgtatatgatc ... tttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTC
aaaaatatgtgttattctatagttgtgacgttaaaatttttgaattttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTCCACCCTCAAGACAATAATATCATTGCTATTGGAATGGAGGACTCTACCA
ttttttcac CT-rich tract
ttaaaatttttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgatctcttcggtgtgtagcacaatcaattgttattaccctagagcataggtcatgagttactttccataaaaatatgtgttattctatagttgtgacgttaaaatttttgaattttttcacagGTCATGACTACTTTCATGGCACCTCCACCTGCTGCAACTTTCCTTGCATTCCACCCTCAAGACAATAATATCATTGCTATTGGAATGGAGGACTCTACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA