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gttgctttctttatcatgtaaaaaagcttgtctctgcaagatatgcatatcattctggatcagcatgtgaccttttttcccctttcaccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG
species | Oryza sativa |
transcript | LOC_Os07g06950.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TGAGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAG GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTEST: gi|27577375|gb|CB000070.1|CB000070
genomic: TGAGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAGgttgctttct ... ccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTT
EST: TGAGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAG GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTEST: gi|58667338|gb|CK056024.1|CK056024
genomic: TGAGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAGgttgctttct ... ccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTT
EST: TGAGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAG GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTEST: gi|58656552|gb|CK045232.1|CK045232
genomic: TGAGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAGgttgctttct ... ccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTT
EST: AGGAAAATGGCTGGTTTTTCACANGGATGAGGAAATTGAACTTTATGANG GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTEST: gi|33796382|gb|CF324058.1|CF324058
genomic: AGGAAAATGGCTGGTTTTTCACA-GGATGAGGAAATTGAACTTTATGA-Ggttgctttct ... ccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCT
EST: GAGGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAG GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAAEST: gi|163920232|gb|EG710577.1|EG710577
genomic: GAGG-AAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAGgttgctttct ... ccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAA
EST: TGAGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAG GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTT
genomic: TGAGGAAAATGGCTGGTTTTTCACAGGATGAGGAAATTGAACTTTATGAGgttgctttct ... ccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTT
atgcatatcattctggatcagcatgtgaccttttttcccctttcaccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG
tgaccttttttcccct CT-rich tract
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctttctttatcatgtaaaaaagcttgtctctgcaagatatgcatatcattctggatcagcatgtgaccttttttcccctttcaccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT