1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaaacccatcctgtacaacacaataatgtattcgaatttctttcttttaccattatcatgcaatcctgttgcggcaaatagaagtttcttggattatactgttacattagttttaaatgtggaattgccaggcgatatttgaccaattgtactcattgtttgaattcaaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTG
species | Oryza sativa |
transcript | LOC_Os06g04450.2 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTAGCATAGATGACCCTCCACAATTTATTTCG AAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCACEST: gi|86602710|gb|CI357074.1|CI357074
genomic: TCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG AAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCACEST: gi|88255329|gb|CI354153.1|CI354153
genomic: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: GCATAGATGACCCTCCACAATTTATTTCG AAGCTG-AGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCACEST: gi|88251813|gb|CI349050.1|CI349050
genomic: GCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG AAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCACEST: gi|86486040|gb|CI128673.1|CI128673
genomic: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: AAATTGTCCTGGGACCTTCTAGCATAGATGACGCTCCACAATTTATTTCG AAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCACEST: gi|88257802|gb|CI360388.1|CI360388
genomic: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG AAGGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCA
genomic: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAA-GCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCA
aattgccaggcgatatttgaccaattgtactcattgtttgaattcaaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTG
atttgac putative branch site (score: 11)
tttgaattcaaaaat TA-rich tract