1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaaaacttcaagcattttagtgacttagtgttgctactttgtgactgatttgtttgtgtttctgtttctgttcttgaaccatctttccttttctgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTCGAGACACTCCAGCGCACAGATGCAATCAAGCATCTGATACCGATTCTTGAACTTC
species | Oryza sativa |
transcript | LOC_Os04g56530.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTCGGGAGATGCCTAATTGTCTCGAEST: gi|58677958|gb|CK066645.1|CK066645
genomic: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAGgtaaaacttc ... ttttctgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGAT-CCTAATTGTCTCGA
EST: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTEST: gi|29641523|gb|CB646530.1|CB646530
genomic: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAGgtaaaacttc ... ttttctgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGT
EST: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTTAGGTGATCCTAATTGTCTCGAEST: gi|117220975|gb|CT845486.1|CT845486
genomic: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAGgtaaaacttc ... ttttctgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTCGA
EST: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTCGAGACAEST: gi|33809579|gb|CF330675.1|CF330675
genomic: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAGgtaaaacttc ... ttttctgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTCGAGACA
EST: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTCGAGACA
genomic: CACGGCTTTTCCAGATGTTTAACAAGATAGAACCGCCTATTCTTCTTAAGgtaaaacttc ... ttttctgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTCGAGACA
actgatttgtttgtgtttctgtttctgttcttgaaccatctttccttttctgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTCGAGACACTCCAGCGCACAGATGCAATCAAGCATCTGATACCGATTCTTGAACTTC
gactgat putative branch site (score: 15)
ccatctttccttttct putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacttcaagcattttagtgacttagtgttgctactttgtgactgatttgtttgtgtttctgtttctgttcttgaaccatctttccttttctgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTCGAGACACTCCAGCGCACAGATGCAATCAAGCATCTGATACCGATTCTTGAACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG