1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tgaataaaccagaaaaaaatatatgccaatgtatccattacagaagatgtccggcattgcaatacttgaatcttgcattttggtgaattccactttgcagGGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACATCTCATCAAGGAAAAAAGCAATTTGCAACGGAAATAGAAACTATATCCC
species | Oryza sativa |
transcript | LOC_Os04g52600.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAG GGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACAEST: gi|29640571|gb|CB645580.1|CB645580
genomic: TTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGgttagtcatc ... cactttgcagGGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACA
EST: TTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAG GGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACAEST: gi|29680824|gb|CB677099.1|CB677099
genomic: TTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGgttagtcatc ... cactttgcagGGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACA
EST: TTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAG GGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACAEST: gi|29661052|gb|CB657327.1|CB657327
genomic: TTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGgttagtcatc ... cactttgcagGGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACA
EST: TTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAG GGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACAEST: gi|29633789|gb|CB638798.1|CB638798
genomic: TTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGgttagtcatc ... cactttgcagGGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACA
EST: TCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAG GGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACA
genomic: TCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGgttagtcatc ... cactttgcagGGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACA
gatgtccggcattgcaatacttgaatcttgcattttggtgaattccactttgcagGGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACATCTCATCAAGGAAAAAAGCAATTTGCAACGGAAATAGAAACTATATCCC
ttccacttt CT-rich tract
aatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaataaaccagaaaaaaatatatgccaatgtatccattacagaagatgtccggcattgcaatacttgaatcttgcattttggtgaattccactttgcagGGTAAGTTAAATGATGGAAGGGTAGTGGCAGTGAAGCAGCTATCTCAAACATCTCATCAAGGAAAAAAGCAATTTGCAACGGAAATAGAAACTATATCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-gaataaa
- - - - - - aaaaaaa
- - - - - - - - - - atatgcc
- - - - - - - - - - - - - - -tgtatcc
- - - - - - - - - - - - - - - - - - - -acagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg