1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tattgtcatatcttcacttaataactaggatctccttgctgccttctattcctgttcatcatatactattaccaaaaattaaataaataaacattttcagGCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAATGAACCAGTGGAGTTTCCATGGATGGTTGATGGTGCAGGATTGCCTGCAA
species | Oryza sativa |
transcript | LOC_Os03g48300.3 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAG GCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAATEST: gi|33675067|gb|CF303306.1|CF303306
genomic: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAGgtttgctctc ... acattttcagGCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAAT
EST: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAG GCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAATEST: gi|58659458|gb|CK048138.1|CK048138
genomic: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAGgtttgctctc ... acattttcagGCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAAT
EST: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAG GCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAATEST: gi|29622332|gb|CB627343.1|CB627343
genomic: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAGgtttgctctc ... acattttcagGCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAAT
EST: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAG GCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAATEST: gi|86905523|gb|CI285486.1|CI285486
genomic: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAGgtttgctctc ... acattttcagGCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAAT
EST: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAG GCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAAT
genomic: CTATGCTAGATGGATTGGAAGATGCTAGCATCGAGATGGATGAAGCAAAGgtttgctctc ... acattttcagGCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAAT
ctattcctgttcatcatatactattaccaaaaattaaataaataaacattttcagGCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAATGAACCAGTGGAGTTTCCATGGATGGTTGATGGTGCAGGATTGCCTGCAA
cattttc CT-rich tract
atcatatactattacc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtcatatcttcacttaataactaggatctccttgctgccttctattcctgttcatcatatactattaccaaaaattaaataaataaacattttcagGCTAGATTGCATGAGATCATCATTACAAATGCTAAAGCAAAGAATACCAATGAACCAGTGGAGTTTCCATGGATGGTTGATGGTGCAGGATTGCCTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - cttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa