1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtattgttaacactcccaatgcacagcagaaaaaatataaaatttgttgatcttacaaactataagcaatgttgtgttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAGCAATGGCTGCCTTAACATCAGCGTTCAATCCATCAGCAAAACCCAAAA
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|58677092|gb|CK065779.1|CK065779
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|38568672|gb|CD670887.1|CD670887
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|396941448|gb|HO188657.1|HO188657
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|29669712|gb|CB665987.1|CB665987
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|58661440|gb|CK050120.1|CK050120
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCGTCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|38477625|gb|CF961758.1|CF961758
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATGGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|58673715|gb|CK062401.1|CK062401
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATNGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|56157785|gb|C26501.2|C26501
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAAGCGCGCTTTEST: gi|58672631|gb|CK061317.1|CK061317
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCA-GCGCGCTT-
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|58612287|gb|CK039999.1|CK039999
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG GGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAEST: gi|58652765|gb|CK041445.1|CK041445
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCA
EST: CATTGGCTGCTCTTTCATCTGAATTCAAACCATCTTCCCAAAAGAATAAG GGTAATGATAGGGCTAAAAGCTCTGATGGTGG
genomic: CATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAGgtattgttaa ... ttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGG
aaaatataaaatttgttgatcttacaaactataagcaatgttgtgttctttttagGGTAATGATAGGCCTAAAAGCTCTGATGGTGGACCCACTCAGCGCGCTTCAGCAATGGCTGCCTTAACATCAGCGTTCAATCCATCAGCAAAACCCAAAA
atcttac putative branch site (score: 3)
tgttcttttt putative PPT
ataaaatttgttgat TA-rich tract