1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtcagcttttctgcacttacaaatattacttctccgcaacaaaaaaaacattcttttacaagatgaaatggacttgattttactttatgctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCACTGCTGATGGTTTGCAAACTCTGACAAACAACTTGTGCTACAC
species | Oryza sativa |
transcript | LOC_Os02g45070.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GAAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|88960427|gb|CI006388.1|CI006388
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|86499428|gb|CI142061.1|CI142061
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: CCATCCTACTGAGTTTGATTTCTACCTGTGTAACCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|58673688|gb|CK062374.1|CK062374
genomic: CCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|86541213|gb|CI181419.1|CI181419
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACGAGTTCEST: gi|14571449|gb|BI118817.1|BI118817
genomic: GCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|38469760|gb|CF953891.1|CF953891
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|86430935|gb|CI083358.1|CI083358
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: TGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCAGGTTCTGTGGGATGAGAACAAGTTCEST: gi|218488951|gb|FG960688.1|FG960688
genomic: TGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|14571456|gb|BI118824.1|BI118824
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|29669480|gb|CB665755.1|CB665755
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|58599567|gb|CK010095.1|CK010095
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|29657069|gb|CB653344.1|CB653344
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|86521035|gb|CI161241.1|CI161241
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTGTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCEST: gi|29626579|gb|CB631590.1|CB631590
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
aaaacattcttttacaagatgaaatggacttgattttactttatgctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCACTGCTGATGGTTTGCAAACTCTGACAAACAACTTGTGCTACAC
acttgat putative branch site (score: 5)
ctattttt putative PPT
attttactttatgcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcttttctgcacttacaaatattacttctccgcaacaaaaaaaacattcttttacaagatgaaatggacttgattttactttatgctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTCACTGCTGATGGTTTGCAAACTCTGACAAACAACTTGTGCTACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT