1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtaggctttgtttttgttactgtatctgttatatacacatatttgctaaaagagctgaaaataatgccattactttcttttatttattcaaatttgtcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGATCCTCTATGGGGTTCTATAGCTGCTCCAGCACCCAAAAATGCATCGAA
species | Oryza sativa |
transcript | LOC_Os01g60440.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGGCCAAACCAGAAGAGGEST: gi|29656612|gb|CB652887.1|CB652887
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|58603390|gb|CK013918.1|CK013918
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGGCCAAACCAGAAGAGGEST: gi|300215776|gb|HO088402.1|HO088402
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|29640582|gb|CB645591.1|CB645591
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|86482087|gb|CI124720.1|CI124720
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: CTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|313079997|gb|HO213317.1|HO213317
genomic: CTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|218482575|gb|FG966889.1|FG966889
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|218497307|gb|FG954387.1|FG954387
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|38477603|gb|CF961736.1|CF961736
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|29623604|gb|CB628615.1|CB628615
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGEST: gi|33675788|gb|CF304027.1|CF304027
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
EST: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAG TATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
genomic: TAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGgtaggctttg ... tcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGG
gagctgaaaataatgccattactttcttttatttattcaaatttgtcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGATCCTCTATGGGGTTCTATAGCTGCTCCAGCACCCAAAAATGCATCGAA
attactttcttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctttgtttttgttactgtatctgttatatacacatatttgctaaaagagctgaaaataatgccattactttcttttatttattcaaatttgtcaactgtagTATCAAATTCGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGATCCTCTATGGGGTTCTATAGCTGCTCCAGCACCCAAAAATGCATCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT