1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagttttcccacacacaatactgcaaaccccattctatttgcatgcgattgtttgtattcctgacagaggagacaatcctacttgataatgcagGTCGAAGCCAATGATGCAGTGGCAGTCGCTGGGATGCTCAAGCCCAAATCGCTGCCAACCGAAACCTTAGTTGACACCGCAGTCTCTGCAGCCACCAAGC
species | Oryza sativa |
transcript | LOC_Os12g44140.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCAGGCGCAGCAGGAGCTCTCCGTCGTCATTGACCTCATCTCCACT GTCGAAGCCAATGATGCAGTGGCAGTCGCTGGGATGCTCAAGCCCAAATCGEST: gi|58688845|gb|CK077532.1|CK077532
genomic: TGCAGCAGGCGCAGCAGGAGCTCTCCGTCGTCATTGACCTCATCTCCACTgtcagttttc ... gataatgcagGTCGAAGCCAATGATGCAGTGGCAGTCGCTGGGATGCTCAAGCCCAAATCG
EST: GCAGGCAGGCGCAGCAGGAGCTCTCCGTCGTCATTGACCTCATCTCCACT GTCGAAGCCAATGATGCAGTGGCAGTCGCTGGGATGCTCAAGCCCAAATCG
genomic: GCA-GCAGGCGCAGCAGGAGCTCTCCGTCGTCATTGACCTCATCTCCACTgtcagttttc ... gataatgcagGTCGAAGCCAATGATGCAGTGGCAGTCGCTGGGATGCTCAAGCCCAAATCG
tgcatgcgattgtttgtattcctgacagaggagacaatcctacttgataatgcagGTCGAAGCCAATGATGCAGTGGCAGTCGCTGGGATGCTCAAGCCCAAATCGCTGCCAACCGAAACCTTAGTTGACACCGCAGTCTCTGCAGCCACCAAGC
tttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttttcccacacacaatactgcaaaccccattctatttgcatgcgattgtttgtattcctgacagaggagacaatcctacttgataatgcagGTCGAAGCCAATGATGCAGTGGCAGTCGCTGGGATGCTCAAGCCCAAATCGCTGCCAACCGAAACCTTAGTTGACACCGCAGTCTCTGCAGCCACCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG