1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtgctgttattttacaatctcagaggagagaactccttattcaatatttgaacttccttgggggtgtcttatcagtccatttcatgtactcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTGCTGGAATCATCAATCAAGTCAACGTCAAAGCTGGTTCTTCATATACAT
species | Oryza sativa |
transcript | LOC_Os12g43950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGCCTGGCATAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAAGAAAATATTGATGTCCTEST: gi|88403303|gb|CI573026.1|CI573026
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|428262|gb|D24410.1|D24410
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|88725163|gb|CI748422.1|CI748422
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|88425781|gb|CI571681.1|CI571681
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGACAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAAAGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|33677645|gb|CF305884.1|CF305884
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCATTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|1438555|gb|U60305.1|U60305
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTAT-AGTTCAACAAG GGAAGGTTGAACGGGATCA-GTTTEST: gi|29629670|gb|CB634679.1|CB634679
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAG-TTGAACGGGATCAAGTTT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|4881153|gb|AU065452.1|AU065452
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
tatttgaacttccttgggggtgtcttatcagtccatttcatgtactcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTGCTGGAATCATCAATCAAGTCAACGTCAAAGCTGGTTCTTCATATACAT
atttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgctgttattttacaatctcagaggagagaactccttattcaatatttgaacttccttgggggtgtcttatcagtccatttcatgtactcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTGCTGGAATCATCAATCAAGTCAACGTCAAAGCTGGTTCTTCATATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG