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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggtaccccaaattccccatcgccgccgcccccgatccggcgatgccgctgcgcccgccgcccccgcctcagggattcctcaccgcgtatccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGTGCTGACCTTCAGGTTCCACTCCCTCGCCGTCTTGAAATTATTCGACCG

Basic information

species Oryza sativa
transcript LOC_Os12g42730.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680089|gb|CB676364.1|CB676364
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: gi|29679033|gb|CB675308.1|CB675308
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: gi|29674623|gb|CB670898.1|CB670898
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: gi|29675652|gb|CB671927.1|CB671927
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: gi|29639895|gb|CB644904.1|CB644904
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: gi|29677656|gb|CB673931.1|CB673931
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: gi|29679976|gb|CB676251.1|CB676251
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: gi|38478499|gb|CF962632.1|CF962632
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: gi|29680084|gb|CB676359.1|CB676359
EST:     CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG                         CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgctgcgcccgccgcccccgcctcagggattcctcaccgcgtatccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGTGCTGACCTTCAGGTTCCACTCCCTCGCCGTCTTGAAATTATTCGACCG
                               tcctcac  putative branch site (score: 2)
                                            tccatcc  putative PPT