1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttttggtcctattgtcttcatatatttttttctttactactattggtttgttcctctttgttttttgggtaacctttgagcctttggatgcaacagCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATC
species | Oryza sativa |
transcript | LOC_Os12g41715.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAATTATTCGGCACAATGAAAAGAATAG CCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCEST: gi|29631622|gb|CB636631.1|CB636631
genomic: GCAATTATTCGGCACAATGAAAAGAATAGgtaagttttg ... gatgcaacagCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGC
EST: TTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAG CCCTGGTAAATTTCCCTTGGCTATTGTGTTGGCCCCAACAAGAGAACTCGCEST: gi|29665871|gb|CB662146.1|CB662146
genomic: TTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGgtaagttttg ... gatgcaacagCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGC
EST: TTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAG CCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCEST: gi|29658735|gb|CB655010.1|CB655010
genomic: TTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGgtaagttttg ... gatgcaacagCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGC
EST: TTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAG CCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGC
genomic: TTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGgtaagttttg ... gatgcaacagCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGC
attggtttgttcctctttgttttttgggtaacctttgagcctttggatgcaacagCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATC
gggtaac putative branch site (score: 36)
tttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttggtcctattgtcttcatatatttttttctttactactattggtttgttcctctttgttttttgggtaacctttgagcctttggatgcaacagCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG