1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttgtttgtttccattgcttactcttgtactcataatcttcatatgtaactgttgcgttctgagctcgacgctttcttgttgatatatatttggtttcgaacatttgaatttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGA
species | Oryza sativa |
transcript | LOC_Os12g41220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|86594483|gb|CI253382.1|CI253382
genomic: GTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|88202676|gb|CI201031.1|CI201031
genomic: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACGAGGACEST: gi|88976081|gb|CI024324.1|CI024324
genomic: ATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|218484853|gb|FG952402.1|FG952402
genomic: ACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|86596069|gb|CI266572.1|CI266572
genomic: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ACGATATTTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|86506371|gb|CI149004.1|CI149004
genomic: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: GTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|58679822|gb|CK068509.1|CK068509
genomic: GTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|88349269|gb|CI678245.1|CI678245
genomic: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|33815684|gb|CF333693.1|CF333693
genomic: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: GACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACEST: gi|88735525|gb|CI759033.1|CI759033
genomic: GACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGAGAAGGACEST: gi|87036157|gb|CI189604.1|CI189604
genomic: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
EST: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAAC ACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
genomic: ACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACgtaagttgtt ... tttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGAC
ctcgacgctttcttgttgatatatatttggtttcgaacatttgaatttttgatagACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGA
tgttgat putative branch site (score: 80)
ttttt putative PPT
ttgttgatatatattt TA-rich tract