1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...actgtaactcaagaaactctggtttaatagatatatgttttcgatttgcatttcaagccttgagtctcttaactgacttcggtgacctgtttttccacagGGATGAGCTAACTAGGTTTGTCTCAGAGAAGCGATCTCTCTCGGTTCTCAAATTAGATGGTTGCAGTAATCTCAATTTTCTTAATATAAGCTCTTCAAGC
species | Oryza sativa |
transcript | LOC_Os12g40860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATATCTGGAGATCAGCATGGTCGGAAGCGCAGCCAACCGAATGACAGG GGATGAGCTAACTAGGTTTGTCTCAGAGAAGCGATCTCTCTCGGTTCTCAAEST: gi|58679000|gb|CK067687.1|CK067687
genomic: CAATATCTGGAGATCAGCATGGTCGGAAGCGCAGCCAACCGAATGACAGGgtacggtgaa ... ttttccacagGGATGAGCTAACTAGGTTTGTCTCAGAGAAGCGATCTCTCTCGGTTCTCAA
EST: GGTCGGAAGCGCAGCCAACCGAATGACAGG TGATGAGCTAACTAGGTTTGTCTCAGAGAAGCGATCTCTCTCGGTTCTCAA
genomic: GGTCGGAAGCGCAGCCAACCGAATGACAGGgtacggtgaa ... ttttccacagGGATGAGCTAACTAGGTTTGTCTCAGAGAAGCGATCTCTCTCGGTTCTCAA
ttgcatttcaagccttgagtctcttaactgacttcggtgacctgtttttccacagGGATGAGCTAACTAGGTTTGTCTCAGAGAAGCGATCTCTCTCGGTTCTCAAATTAGATGGTTGCAGTAATCTCAATTTTCTTAATATAAGCTCTTCAAGC
aactgac putative branch site (score: 4)
cctgtttttcc putative PPT
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgtaactcaagaaactctggtttaatagatatatgttttcgatttgcatttcaagccttgagtctcttaactgacttcggtgacctgtttttccacagGGATGAGCTAACTAGGTTTGTCTCAGAGAAGCGATCTCTCTCGGTTCTCAAATTAGATGGTTGCAGTAATCTCAATTTTCTTAATATAAGCTCTTCAAGC
- - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - -ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - -caagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacctg