1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtctatgtcttttgtttattttattagtgtgtattatcatagttatgagtatacatttttgatgatttagatcatgatacaaatgagagtttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTTGTGAGTCTGTTGAGAGGCATCAGGCGGAGATGTTGGTTGTCGGAAGCC
species | Oryza sativa |
transcript | LOC_Os12g36640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG GTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTEST: gi|88508997|gb|CI436503.1|CI436503
genomic: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
EST: CTCTGCGCCCAG GTGAGTAATGCTCTGTTTGAAGTGCTGGAAGGGAATGCCAGGAATNTTCTTEST: gi|86424109|gb|CI062870.1|CI062870
genomic: CTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
EST: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG GTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTEST: gi|8860142|gb|AU097460.1|AU097460
genomic: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
EST: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG GTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTEST: gi|218498665|gb|FG952674.1|FG952674
genomic: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
EST: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGCGAGCTCTGCGCCCAG GTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTEST: gi|29623326|gb|CB628337.1|CB628337
genomic: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
EST: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG GTGAGTGATGCTCTGTTTGAAGTGCTTGAAGGGGATGCCAGGAATGTTCTTEST: gi|58031113|gb|CX728656.1|CX728656
genomic: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
EST: CTCTGCGCCCAG GTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTEST: gi|94362829|gb|CI052990.1|CI052990
genomic: CTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
EST: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG GTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTEST: gi|29686559|gb|CB682834.1|CB682834
genomic: AGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
EST: CTCTGCGCCCAG GCCATTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
genomic: CTCTGCGCCCAGgtgatccgag ... tttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTT
atgagtatacatttttgatgatttagatcatgatacaaatgagagtttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTTGTGAGTCTGTTGAGAGGCATCAGGCGGAGATGTTGGTTGTCGGAAGCC
ttttgat putative branch site (score: 4)
atttttgatgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctatgtcttttgtttattttattagtgtgtattatcatagttatgagtatacatttttgatgatttagatcatgatacaaatgagagtttgctgcagGTGAGTGATGCTCTGTTTGAAGTGCTGGAAGGGGATGCCAGGAATGTTCTTTGTGAGTCTGTTGAGAGGCATCAGGCGGAGATGTTGGTTGTCGGAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - -cttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgat