1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgatgcagtatcatatcacatcagaggaatgattttgattttcagtccaaaacgaattgcttgctttttttgtgctgtaacagtaaactgaaattttcagGTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCAACCAAAGCTACTGATAATCATAGTTTCTCCAACACATATGCAACTTCTT
species | Oryza sativa |
transcript | LOC_Os12g32230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGAGCTGGCCCGCCGTCGCCGCGGCTGCTGCCGGCCTGATCACGCG GTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCAEST: gi|66923622|gb|CX110470.1|CX110470
genomic: TCTCCGAGCTGGCCCGCCGTCGCCGCGGCTGCTGCCGGCCTGATCACGCGgtgagcttct ... aaattttcagGTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCA
EST: TCTCCGAGCTGGCCCGCCGTCGCCGCGGCTGCAGCCGGCCTGATCACGCG GTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCAEST: gi|58693171|gb|CK081858.1|CK081858
genomic: TCTCCGAGCTGGCCCGCCGTCGCCGCGGCTGCTGCCGGCCTGATCACGCGgtgagcttct ... aaattttcagGTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCA
EST: TCTCCGAGCTGGCCCGCCGTCGCCGCGGCTGCTGCCGGCCTGATCACGCG GTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCAEST: gi|29671508|gb|CB667783.1|CB667783
genomic: TCTCCGAGCTGGCCCGCCGTCGCCGCGGCTGCTGCCGGCCTGATCACGCGgtgagcttct ... aaattttcagGTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCA
EST: TCTCCGAGCTGGCCCGCCGTCGCCGCGGCTGCTGCCGGCCTGATCACGCG GTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCA
genomic: TCTCCGAGCTGGCCCGCCGTCGCCGCGGCTGCTGCCGGCCTGATCACGCGgtgagcttct ... aaattttcagGTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCA
tccaaaacgaattgcttgctttttttgtgctgtaacagtaaactgaaattttcagGTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCAACCAAAGCTACTGATAATCATAGTTTCTCCAACACATATGCAACTTCTT
ctgtaac putative branch site (score: 3)
ttttc putative PPT
taaactgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgcagtatcatatcacatcagaggaatgattttgattttcagtccaaaacgaattgcttgctttttttgtgctgtaacagtaaactgaaattttcagGTTGATGCGATGAGAGCTGGGCTCCAATGTTTGATGAGCACTTGCTCCTCAACCAAAGCTACTGATAATCATAGTTTCTCCAACACATATGCAACTTCTT
tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - -aaacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctgt