Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagccaccttctcttaagcatctgaaatagtatatccctgaattaatacatttctgattgttagttagtctgaaattttgctgacagtgatttttttttgtttgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGTATAGGGAACCTCTCTACTCAGTATGCATGGGCATATGTAGGTCTCTCAG

Basic information

species Oryza sativa
transcript LOC_Os12g31850.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29614658|gb|CB619671.1|CB619671
EST:     TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAG                         GATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
genomic: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccacc ... tgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
EST: gi|88299367|gb|CI572319.1|CI572319
EST:     TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAG                         GATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
genomic: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccacc ... tgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
EST: gi|29665274|gb|CB661549.1|CB661549
EST:     TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAG                         GATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
genomic: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccacc ... tgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
EST: gi|29614656|gb|CB619669.1|CB619669
EST:     TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAG                         GATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
genomic: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccacc ... tgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttagttagtctgaaattttgctgacagtgatttttttttgtttgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGTATAGGGAACCTCTCTACTCAGTATGCATGGGCATATGTAGGTCTCTCAG
                     tgctgac  putative branch site (score: 2)
                                 tttttttttgtttgc  putative PPT
                              tgatttttttttgttt  TA-rich tract