1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgctgagcaagtttaatggcatcttatgttgttttctctgagtccatgtgaactaactcaaatgttggtctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCAT
species | Oryza sativa |
transcript | LOC_Os12g22030.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAEST: gi|88731473|gb|CI755086.1|CI755086
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAEST: gi|86521243|gb|CI161449.1|CI161449
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
EST: TGGGATCTGCGCCCTCTTGGCTTGACTG GTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAEST: gi|86520924|gb|CI161130.1|CI161130
genomic: TGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGGCTG GTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACCAAAEST: gi|86514112|gb|CI156745.1|CI156745
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
EST: TGGCTTGGCTG GTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAEST: gi|87027893|gb|CI276249.1|CI276249
genomic: TGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GTAACTAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACTAAAEST: gi|58683023|gb|CK071710.1|CK071710
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAEST: gi|58589560|gb|CF987868.1|CF987868
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAEST: gi|218489698|gb|FG969212.1|FG969212
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAATAAAA
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... tctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAA
ttatgttgttttctctgagtccatgtgaactaactcaaatgttggtctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCAT
aactaac putative branch site (score: 41)
tctgcctt putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctgagcaagtttaatggcatcttatgttgttttctctgagtccatgtgaactaactcaaatgttggtctgccttagGTAACAAAGTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG