1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttcctttatttgtctgtttatctgtgtttacatatttggtcatcagcaacataatcttagatatcgtttgatgacatttgatatttccttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATCTTCAGAACGATGAGGATCAGGCGTACCGTAAGATCAGACTACGTGCCG
species | Oryza sativa |
transcript | LOC_Os12g21798.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|58684406|gb|CK073093.1|CK073093
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|87006042|gb|CI289459.1|CI289459
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|117216849|gb|CT845233.1|CT845233
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGGGGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|88352366|gb|CI615620.1|CI615620
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|88398529|gb|CI595930.1|CI595930
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|44675333|gb|CR288767.1|CR288767
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|58686699|gb|CK075386.1|CK075386
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|88396444|gb|CI600927.1|CI600927
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGGTGATEST: gi|87023682|gb|CI286433.1|CI286433
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|88390567|gb|CI609192.1|CI609192
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: CGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAEST: gi|33812109|gb|CF331944.1|CF331944
genomic: CGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGC-ACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGA
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTAAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|88388997|gb|CI595231.1|CI595231
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|218498217|gb|FG958345.1|FG958345
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|58670980|gb|CK059666.1|CK059666
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|88426821|gb|CI584184.1|CI584184
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|218490212|gb|FG960812.1|FG960812
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|38477979|gb|CF962112.1|CF962112
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGAGGCAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|88424522|gb|CI608108.1|CI608108
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|38473073|gb|CF957205.1|CF957205
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|218500733|gb|FG957743.1|FG957743
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATEST: gi|9884533|gb|BE607366.1|BE607366
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
EST: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAG ATTGCTTCAGATGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
genomic: ACGTGAGAAACGTCGGGAAGACGCTCGTGTCCAGGACACAGGGCACAAAGgtatcagcct ... ttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGAT
cagcaacataatcttagatatcgtttgatgacatttgatatttccttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATCTTCAGAACGATGAGGATCAGGCGTACCGTAAGATCAGACTACGTGCCG
atttgat putative branch site (score: 69)
tatttccttcatttt CT-rich tract
ataatcttagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcctttatttgtctgtttatctgtgtttacatatttggtcatcagcaacataatcttagatatcgtttgatgacatttgatatttccttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATCTTCAGAACGATGAGGATCAGGCGTACCGTAAGATCAGACTACGTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - tctgttt
- - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - caacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatga