1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgccatttgttttgttcttagttcttgaatgtttttcttgtgagatggcataaatttgaccataatcttaaggaccaaaatggtccatttctgggtgcagACAGAGAAAGTTGAGCTGGAGAGAACTGTTGTGCATGAAACTAAGGAGAGGGAAGCACATGGATATGCTAATGGCAGATATAGTG
species | Oryza sativa |
transcript | LOC_Os12g18770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACAGCAGCAGCAGTATTCTATTTTGATAGATCGGCTCCGACAACTAGAG ACAGAGAAAGTTGAGCTGGAGAGAACTGTTGTGCATGAAACTAAGGAGAGGEST: gi|88584603|gb|CI702169.1|CI702169
genomic: CACAGCAGCAGCAGTATTCTATTTTGATAGATCGGCTCCGACAACTAGAGgtagctttcc ... ctgggtgcagACAGAGAAAGTTGAGCTGGAGAGAACTGTTGTGCATGAAACTAAGGAGAGG
EST: CACAGCAGCAGCAGTATTCTATTTTGATAGATCGGCTCCGACAACTAGAG ACAGAGAAAGTTGAGCTGGAGAGAACTGTTGTGCATGAAACTAAGGAGAGG
genomic: CACAGCAGCAGCAGTATTCTATTTTGATAGATCGGCTCCGACAACTAGAGgtagctttcc ... ctgggtgcagACAGAGAAAGTTGAGCTGGAGAGAACTGTTGTGCATGAAACTAAGGAGAGG
tggcataaatttgaccataatcttaaggaccaaaatggtccatttctgggtgcagACAGAGAAAGTTGAGCTGGAGAGAACTGTTGTGCATGAAACTAAGGAGAGGGAAGCACATGGATATGCTAATGGCAGATATAGTG
atttgac putative branch site (score: 26)
tccatttct putative PPT
ataatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccatttgttttgttcttagttcttgaatgtttttcttgtgagatggcataaatttgaccataatcttaaggaccaaaatggtccatttctgggtgcagACAGAGAAAGTTGAGCTGGAGAGAACTGTTGTGCATGAAACTAAGGAGAGGGAAGCACATGGATATGCTAATGGCAGATATAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
tgccatt
- - - - - -ttgttct
- - - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - -tggcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - accataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaccaaa