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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccagccttaacacaactggttgatggggcttgatgattcgtgtggttgaacctgatcattattatgcaccagttcatatgtgtgcgtgtgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG

Basic information

species Oryza sativa
transcript LOC_Os12g15470.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659836|gb|CB656111.1|CB656111
EST:     CAACGGCGGCCCCTGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG                         GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: gi|117240321|gb|CT842747.1|CT842747
EST:     CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG                         GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: gi|29668081|gb|CB664356.1|CB664356
EST:     CAACGGCGGCCCCCGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG                         GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: gi|58695212|gb|CK083899.1|CK083899
EST:     CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG                         GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: gi|33801783|gb|CF326764.1|CF326764
EST:     CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG                         GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: gi|58660840|gb|CK049520.1|CK049520
EST:     CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG                         GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: gi|4715276|gb|AU056393.1|AU056393
EST:     GGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG                         GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: GGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgaacctgatcattattatgcaccagttcatatgtgtgcgtgtgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG
      acctgat  putative branch site (score: 4)
                                             tgctttcc  putative PPT
           atcattattat  TA-rich tract