1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttccagccttaacacaactggttgatggggcttgatgattcgtgtggttgaacctgatcattattatgcaccagttcatatgtgtgcgtgtgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG
species | Oryza sativa |
transcript | LOC_Os12g15470.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|29659836|gb|CB656111.1|CB656111
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCTGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|29668081|gb|CB664356.1|CB664356
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCCGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|58695212|gb|CK083899.1|CK083899
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|33801783|gb|CF326764.1|CF326764
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|58660840|gb|CK049520.1|CK049520
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|4715276|gb|AU056393.1|AU056393
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: GGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: GGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
ggttgaacctgatcattattatgcaccagttcatatgtgtgcgtgtgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG
acctgat putative branch site (score: 4)
tgctttcc putative PPT
atcattattat TA-rich tract